diff --git a/pyproject.toml b/pyproject.toml index 2ab98db..1620ad8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ readme = "README.md" [tool.poetry.dependencies] python = "^3.11" # use `rev` to pin to a specific hash, or tag, from the git repo -labretriever = {git = "https://github.com/cmatKhan/labretriever.git", rev = "ecaa7e3"} +labretriever = {git = "https://github.com/cmatKhan/labretriever.git", rev = "9037f02"} shiny = "^1.4.0" shinywidgets = "^0.7.1" upsetjs-jupyter-widget = "^1.9.0" diff --git a/tfbpshiny/brentlab_yeast_collection.yaml b/tfbpshiny/brentlab_yeast_collection.yaml index fb7980f..71364ce 100644 --- a/tfbpshiny/brentlab_yeast_collection.yaml +++ b/tfbpshiny/brentlab_yeast_collection.yaml @@ -16,6 +16,10 @@ repositories: assay: CallingCards display_name: "2026 Calling Cards" db_name: callingcards + description: >- + Data generated with calling cards, a method that inserts transposons + near TF binding sites, from cells growing on synthetic complete media + at room temperature with galactose as the sole carbon source. sample_id: field: gm_id @@ -57,6 +61,10 @@ repositories: data_type: binding assay: ChIPexo display_name: "2021 ChIP-exo (Rossi)" + description: >- + ChIP-exo (a variant of ChIP-seq) data, primarily in YPD batch + cultures at 25C. Includes DNA-binding transcription factors and + many other chromatin factors. db_name: rossi sample_id: field: sample_id @@ -112,6 +120,10 @@ repositories: data_type: perturbation assay: ChIPexo display_name: "2025 Degron (Mahendrawada)" + description: >- + RNA-seq expression data generated from nascent RNA (4TU labelling and + purification) following depletion of a given TF via the auxin-inducible + degron system. db_name: degron sample_id: field: sample_id