SCOT/DESCRIPTION at main · CCBR/SCOT · GitHub

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Package: SCOT
Title: Single Cell Omics Toolbox
Version: 0.0.0.9000
Authors@R: c(
    person("Nathan", "Wong", , "nathan.wong@nih.gov", role = c("aut", "cre")),
    person("Kelly", "Sovacool", , "kelly.sovacool@nih.gov", role = "aut",
           comment = c(ORCID = "0000-0003-3283-829X")),
    person("Vishal", "Koparde", , "vishal.koparde@nih.gov", role = "aut",
           comment = c(ORCID = "0000-0001-8978-8495")),
    person("CCR Collaborative Bioinformatics Resource", role = "cph")
  )
Description: Toolbox for single cell RNA-seq.
License: MIT + file LICENSE
Depends:
    R (>= 4.1.0)
Imports:
    AnnotationDbi,
    AUCell,
    BiocGenerics,
    celldex,
    clusterSim,
    djvdj,
    DoubletFinder,
    dplyr,
    DropletUtils,
    flexmix,
    ggplot2,
    ggpubr,
    ggrepel,
    glue,
    grDevices,
    harmony,
    magrittr,
    ontoProc,
    org.Hs.eg.db,
    org.Mm.eg.db,
    Orthology.eg.db,
    reshape2,
    rlang,
    rliger,
    Routliers,
    scDblFinder,
    scRNAseq,
    Seurat,
    SeuratObject,
    SeuratWrappers,
    SingleR,
    stats,
    SummarizedExperiment,
    utils
Suggests:
    cffr,
    glmGamPoi,
    GSEABase,
    knitr,
    ontologyIndex,
    R.utils,
    rmarkdown,
    roxygen2,
    SeuratData,
    SingleCellExperiment,
    testthat (>= 3.0.0),
    usethis
Remotes:
    mdelacre/Routliers,
    chris-mcginnis-ucsf/DoubletFinder,
    rnabioco/djvdj@*release,
    SeuratData=satijalab/seurat-data,
    SeuratWrappers=satijalab/seurat-wrappers
biocViews:
Config/Needs/autoformat: cffr, rmarkdown, roxygen2
Config/Needs/check: rcmdcheck
Config/Needs/lint: lintr, pkgload
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3