Skip to content

Commit fa91b1b

Browse files
kelly-sovacoolkelly-sovacool
committed
deploy: cc24e03 
1 parent 9100deb commit fa91b1b

3 files changed

Lines changed: 40 additions & 40 deletions

File tree

‎index.html‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -488,7 +488,7 @@ <h2 class="anchored" data-anchor-id="basic-usage">Basic usage</h2>
488488
<section id="cli" class="level3">
489489
<h3 class="anchored" data-anchor-id="cli">CLI</h3>
490490
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb4"><pre class="sourceCode sh code-with-copy"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ccbr_tools</span> <span class="at">--help</span></span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
491-
<div id="33b60e30" class="cell" data-execution_count="1">
491+
<div id="cff5a90d" class="cell" data-execution_count="1">
492492
<div class="cell-output cell-output-stdout">
493493
<pre><code>Usage: ccbr_tools [OPTIONS] COMMAND [ARGS]...
494494

@@ -536,7 +536,7 @@ <h3 class="anchored" data-anchor-id="pre-commit-hooks">Pre-commit hooks</h3>
536536
</section>
537537
<section id="python" class="level3">
538538
<h3 class="anchored" data-anchor-id="python">Python</h3>
539-
<div id="fa847813" class="cell" data-execution_count="3">
539+
<div id="94e597d1" class="cell" data-execution_count="3">
540540
<details open="" class="code-fold">
541541
<summary>Code</summary>
542542
<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb7"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> ccbr_tools.shell</span>
@@ -547,7 +547,7 @@ <h3 class="anchored" data-anchor-id="python">Python</h3>
547547
</code></pre>
548548
</div>
549549
</div>
550-
<div id="d3768405" class="cell" data-execution_count="4">
550+
<div id="cfd48157" class="cell" data-execution_count="4">
551551
<details open="" class="code-fold">
552552
<summary>Code</summary>
553553
<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb9"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> ccbr_tools.versions</span>

‎reference/templates.html‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -702,7 +702,7 @@ <h4 class="doc-section doc-section-returns anchored" data-anchor-id="returns">Re
702702
</section>
703703
<section id="examples" class="level4 doc-section doc-section-examples">
704704
<h4 class="doc-section doc-section-examples anchored" data-anchor-id="examples">Examples</h4>
705-
<div id="cd54d7d8" class="cell" data-execution_count="1">
705+
<div id="22bcac1c" class="cell" data-execution_count="1">
706706
<details open="" class="code-fold">
707707
<summary>Code</summary>
708708
<div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb3"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> ccbr_tools.templates <span class="im">import</span> get_quarto_extensions</span>

‎sitemap.xml‎

Lines changed: 36 additions & 36 deletions
Original file line numberDiff line numberDiff line change
@@ -2,146 +2,146 @@
22
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
33
<url>
44
<loc>https://ccbr.github.io/Tools/cite.html</loc>
5-
<lastmod>2026-09-17T17:15:37.731Z</lastmod>
5+
<lastmod>2026-09-18T15:37:14.825Z</lastmod>
66
</url>
77
<url>
88
<loc>https://ccbr.github.io/Tools/CONTRIBUTING.html</loc>
9-
<lastmod>2026-09-17T17:15:37.728Z</lastmod>
9+
<lastmod>2026-09-18T15:37:14.822Z</lastmod>
1010
</url>
1111
<url>
1212
<loc>https://ccbr.github.io/Tools/scripts.html</loc>
13-
<lastmod>2026-09-17T17:15:37.731Z</lastmod>
13+
<lastmod>2026-09-18T15:37:14.825Z</lastmod>
1414
</url>
1515
<url>
1616
<loc>https://ccbr.github.io/Tools/contributors.html</loc>
17-
<lastmod>2026-09-17T17:15:37.731Z</lastmod>
17+
<lastmod>2026-09-18T15:37:14.825Z</lastmod>
1818
</url>
1919
<url>
2020
<loc>https://ccbr.github.io/Tools/reference/module_list.html</loc>
21-
<lastmod>2026-09-17T17:16:17.975Z</lastmod>
21+
<lastmod>2026-09-18T15:38:30.219Z</lastmod>
2222
</url>
2323
<url>
2424
<loc>https://ccbr.github.io/Tools/reference/hooks.sync_nextflow_version.html</loc>
25-
<lastmod>2026-09-17T17:16:18.123Z</lastmod>
25+
<lastmod>2026-09-18T15:38:30.296Z</lastmod>
2626
</url>
2727
<url>
2828
<loc>https://ccbr.github.io/Tools/reference/templates.html</loc>
29-
<lastmod>2026-09-17T17:16:18.030Z</lastmod>
29+
<lastmod>2026-09-18T15:38:30.248Z</lastmod>
3030
</url>
3131
<url>
3232
<loc>https://ccbr.github.io/Tools/reference/GSEA.deg2gs.html</loc>
33-
<lastmod>2026-09-17T17:16:18.126Z</lastmod>
33+
<lastmod>2026-09-18T15:38:30.298Z</lastmod>
3434
</url>
3535
<url>
3636
<loc>https://ccbr.github.io/Tools/reference/jobinfo.html</loc>
37-
<lastmod>2026-09-17T17:16:18.157Z</lastmod>
37+
<lastmod>2026-09-18T15:38:30.314Z</lastmod>
3838
</url>
3939
<url>
4040
<loc>https://ccbr.github.io/Tools/reference/pipeline.nextflow.html</loc>
41-
<lastmod>2026-09-17T17:16:18.078Z</lastmod>
41+
<lastmod>2026-09-18T15:38:30.273Z</lastmod>
4242
</url>
4343
<url>
4444
<loc>https://ccbr.github.io/Tools/reference/GSEA.ncbr_huse.html</loc>
45-
<lastmod>2026-09-17T17:16:18.135Z</lastmod>
45+
<lastmod>2026-09-18T15:38:30.303Z</lastmod>
4646
</url>
4747
<url>
4848
<loc>https://ccbr.github.io/Tools/reference/peek.html</loc>
49-
<lastmod>2026-09-17T17:16:18.164Z</lastmod>
49+
<lastmod>2026-09-18T15:38:30.318Z</lastmod>
5050
</url>
5151
<url>
5252
<loc>https://ccbr.github.io/Tools/reference/hooks.html</loc>
53-
<lastmod>2026-09-17T17:16:18.113Z</lastmod>
53+
<lastmod>2026-09-18T15:38:30.291Z</lastmod>
5454
</url>
5555
<url>
5656
<loc>https://ccbr.github.io/Tools/reference/jobby.html</loc>
57-
<lastmod>2026-09-17T17:16:17.972Z</lastmod>
57+
<lastmod>2026-09-18T15:38:30.217Z</lastmod>
5858
</url>
5959
<url>
6060
<loc>https://ccbr.github.io/Tools/reference/pipeline.util.html</loc>
61-
<lastmod>2026-09-17T17:16:18.112Z</lastmod>
61+
<lastmod>2026-09-18T15:38:30.291Z</lastmod>
6262
</url>
6363
<url>
6464
<loc>https://ccbr.github.io/Tools/reference/send_email.html</loc>
65-
<lastmod>2026-09-17T17:16:18.008Z</lastmod>
65+
<lastmod>2026-09-18T15:38:30.236Z</lastmod>
6666
</url>
6767
<url>
6868
<loc>https://ccbr.github.io/Tools/reference/index.html</loc>
69-
<lastmod>2026-09-17T17:16:17.936Z</lastmod>
69+
<lastmod>2026-09-18T15:38:30.199Z</lastmod>
7070
</url>
7171
<url>
7272
<loc>https://ccbr.github.io/Tools/reference/github.html</loc>
73-
<lastmod>2026-09-17T17:16:17.959Z</lastmod>
73+
<lastmod>2026-09-18T15:38:30.210Z</lastmod>
7474
</url>
7575
<url>
7676
<loc>https://ccbr.github.io/Tools/index.html</loc>
77-
<lastmod>2026-09-17T17:15:37.731Z</lastmod>
77+
<lastmod>2026-09-18T15:37:14.825Z</lastmod>
7878
</url>
7979
<url>
8080
<loc>https://ccbr.github.io/Tools/reference/GSEA.multitext2excel.html</loc>
81-
<lastmod>2026-09-17T17:16:18.127Z</lastmod>
81+
<lastmod>2026-09-18T15:38:30.298Z</lastmod>
8282
</url>
8383
<url>
8484
<loc>https://ccbr.github.io/Tools/reference/spooker.html</loc>
85-
<lastmod>2026-09-17T17:16:18.023Z</lastmod>
85+
<lastmod>2026-09-18T15:38:30.244Z</lastmod>
8686
</url>
8787
<url>
8888
<loc>https://ccbr.github.io/Tools/reference/hooks.detect_absolute_paths.html</loc>
89-
<lastmod>2026-09-17T17:16:18.120Z</lastmod>
89+
<lastmod>2026-09-18T15:38:30.294Z</lastmod>
9090
</url>
9191
<url>
9292
<loc>https://ccbr.github.io/Tools/reference/shell.html</loc>
93-
<lastmod>2026-09-17T17:16:18.013Z</lastmod>
93+
<lastmod>2026-09-18T15:38:30.239Z</lastmod>
9494
</url>
9595
<url>
9696
<loc>https://ccbr.github.io/Tools/reference/pkg_util.html</loc>
97-
<lastmod>2026-09-17T17:16:18.000Z</lastmod>
97+
<lastmod>2026-09-18T15:38:30.232Z</lastmod>
9898
</url>
9999
<url>
100100
<loc>https://ccbr.github.io/Tools/reference/paths.html</loc>
101-
<lastmod>2026-09-17T17:16:17.984Z</lastmod>
101+
<lastmod>2026-09-18T15:38:30.224Z</lastmod>
102102
</url>
103103
<url>
104104
<loc>https://ccbr.github.io/Tools/reference/pipeline.cache.html</loc>
105-
<lastmod>2026-09-17T17:16:18.058Z</lastmod>
105+
<lastmod>2026-09-18T15:38:30.262Z</lastmod>
106106
</url>
107107
<url>
108108
<loc>https://ccbr.github.io/Tools/reference/intersect.html</loc>
109-
<lastmod>2026-09-17T17:16:18.149Z</lastmod>
109+
<lastmod>2026-09-18T15:38:30.310Z</lastmod>
110110
</url>
111111
<url>
112112
<loc>https://ccbr.github.io/Tools/reference/homologfinder.hf.html</loc>
113-
<lastmod>2026-09-17T17:16:18.145Z</lastmod>
113+
<lastmod>2026-09-18T15:38:30.308Z</lastmod>
114114
</url>
115115
<url>
116116
<loc>https://ccbr.github.io/Tools/reference/pipeline.hpc.html</loc>
117-
<lastmod>2026-09-17T17:16:18.073Z</lastmod>
117+
<lastmod>2026-09-18T15:38:30.270Z</lastmod>
118118
</url>
119119
<url>
120120
<loc>https://ccbr.github.io/Tools/reference/software.html</loc>
121-
<lastmod>2026-09-17T17:16:18.015Z</lastmod>
121+
<lastmod>2026-09-18T15:38:30.240Z</lastmod>
122122
</url>
123123
<url>
124124
<loc>https://ccbr.github.io/Tools/reference/gb2gtf.html</loc>
125-
<lastmod>2026-09-17T17:16:18.138Z</lastmod>
125+
<lastmod>2026-09-18T15:38:30.304Z</lastmod>
126126
</url>
127127
<url>
128128
<loc>https://ccbr.github.io/Tools/reference/versions.html</loc>
129-
<lastmod>2026-09-17T17:16:18.050Z</lastmod>
129+
<lastmod>2026-09-18T15:38:30.258Z</lastmod>
130130
</url>
131131
<url>
132132
<loc>https://ccbr.github.io/Tools/reference/pipeline.html</loc>
133-
<lastmod>2026-09-17T17:16:18.005Z</lastmod>
133+
<lastmod>2026-09-18T15:38:30.234Z</lastmod>
134134
</url>
135135
<url>
136136
<loc>https://ccbr.github.io/Tools/CHANGELOG.html</loc>
137-
<lastmod>2026-09-17T17:15:37.729Z</lastmod>
137+
<lastmod>2026-09-18T15:37:14.823Z</lastmod>
138138
</url>
139139
<url>
140140
<loc>https://ccbr.github.io/Tools/cli.html</loc>
141-
<lastmod>2026-09-17T17:15:37.731Z</lastmod>
141+
<lastmod>2026-09-18T15:37:14.825Z</lastmod>
142142
</url>
143143
<url>
144144
<loc>https://ccbr.github.io/Tools/LICENSE.html</loc>
145-
<lastmod>2026-09-17T17:15:37.729Z</lastmod>
145+
<lastmod>2026-09-18T15:37:14.823Z</lastmod>
146146
</url>
147147
</urlset>

0 commit comments

Comments
 (0)