From f9061cd1c104d7884387c0755fa5604dde3364d6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Fri, 6 Feb 2026 15:33:33 +0100 Subject: [PATCH] Split comma-separated accessions into individual values --- amdirt/autofill/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/amdirt/autofill/__init__.py b/amdirt/autofill/__init__.py index 7cf38a4..d8d7796 100644 --- a/amdirt/autofill/__init__.py +++ b/amdirt/autofill/__init__.py @@ -4,7 +4,6 @@ from amdirt.validate.exceptions import NetworkError import json -import sys import pandas as pd def run_autofill(accession, table_name=None, schema=None, dataset=None, sample_output=None, library_output=None, verbose=False, output_ena_table=None): @@ -54,6 +53,7 @@ def run_autofill(accession, table_name=None, schema=None, dataset=None, sample_o raise NetworkError("ENA API is unreachable") query_dict = list() + accession = [aa for a in accession for aa in a.split(",")] for a in accession: query_res = ena.query(a, fields=[ "experiment_accession",