From 086c03c689d522719cdcf5bbff078caa1c84de93 Mon Sep 17 00:00:00 2001 From: Claude Date: Fri, 24 Apr 2026 23:06:13 +0000 Subject: [PATCH 1/7] Phase 1: restructure as a proper Python package (pyproject.toml + src/reflect/) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Adopts google/agents-cli packaging conventions. - Replace install.sh + symlink model with pyproject.toml + uv. - Install via `uv tool install reflect-cli` / `uvx reflect` / `pip install reflect-cli`. - Move lib/*.py → src/reflect/*.py; convert absolute `from lib.X` imports to relative `from .X` imports. Rename version.py → _version.py (hatch-managed). - Extract CLI dispatch from the root `reflect` script into src/reflect/cli.py. Add __main__.py for `python -m reflect`. Console script: reflect = reflect.cli:main. - Move templates/, skill/, hooks/ into src/reflect/_data/ as package data; init.py resolves via Path(__file__).parent / "_data" (works in editable and installed modes). - Rewrite cmd_upgrade to use `uv tool upgrade reflect-cli` instead of the obsolete curl-install.sh pipeline. - Replace release.yml with `uv build` + GitHub Release upload. - Update README install section, CLAUDE.md structure, smoke.sh to invoke the installed console script (`uv run reflect …`). Verified: `uv run reflect --help`, `reflect init --no-wiki`, `reflect status`, scripts/smoke.sh all green. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- .github/workflows/release.yml | 17 +- CLAUDE.md | 49 +- README.md | 29 +- install.sh | 46 - pyproject.toml | 91 ++ scripts/smoke.sh | 28 +- {lib => src/reflect}/__init__.py | 0 src/reflect/__main__.py | 8 + .../reflect/_data/hooks}/session-start.sh | 0 {skill => src/reflect/_data/skill}/SKILL.md | 0 .../reflect/_data/skill}/agents/keeper.md | 0 .../reflect/_data/templates}/config.yaml | 0 .../reflect/_data/templates}/format.yaml | 0 lib/version.py => src/reflect/_version.py | 0 {lib => src/reflect}/aggregates.py | 0 reflect => src/reflect/cli.py | 96 +- {lib => src/reflect}/context.py | 0 {lib => src/reflect}/evidence.py | 0 {lib => src/reflect}/fmt.py | 0 {lib => src/reflect}/improve.py | 0 {lib => src/reflect}/ingest.py | 0 {lib => src/reflect}/init.py | 0 {lib => src/reflect}/lint.py | 0 {lib => src/reflect}/metrics.py | 0 {lib => src/reflect}/search.py | 0 {lib => src/reflect}/sessions.py | 0 {lib => src/reflect}/sources.py | 0 {lib => src/reflect}/status.py | 0 {lib => src/reflect}/timeline.py | 0 {lib => src/reflect}/wiki.py | 0 uv.lock | 939 ++++++++++++++++++ 31 files changed, 1172 insertions(+), 131 deletions(-) delete mode 100755 install.sh create mode 100644 pyproject.toml rename {lib => src/reflect}/__init__.py (100%) create mode 100644 src/reflect/__main__.py rename {hooks => src/reflect/_data/hooks}/session-start.sh (100%) rename {skill => src/reflect/_data/skill}/SKILL.md (100%) rename {skill => src/reflect/_data/skill}/agents/keeper.md (100%) rename {templates => src/reflect/_data/templates}/config.yaml (100%) rename {templates => src/reflect/_data/templates}/format.yaml (100%) rename lib/version.py => src/reflect/_version.py (100%) rename {lib => src/reflect}/aggregates.py (100%) rename reflect => src/reflect/cli.py (76%) mode change 100755 => 100644 rename {lib => src/reflect}/context.py (100%) rename {lib => src/reflect}/evidence.py (100%) rename {lib => src/reflect}/fmt.py (100%) rename {lib => src/reflect}/improve.py (100%) rename {lib => src/reflect}/ingest.py (100%) rename {lib => src/reflect}/init.py (100%) rename {lib => src/reflect}/lint.py (100%) rename {lib => src/reflect}/metrics.py (100%) rename {lib => src/reflect}/search.py (100%) rename {lib => src/reflect}/sessions.py (100%) rename {lib => src/reflect}/sources.py (100%) rename {lib => src/reflect}/status.py (100%) rename {lib => src/reflect}/timeline.py (100%) rename {lib => src/reflect}/wiki.py (100%) create mode 100644 uv.lock diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 53f9099..b90f924 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -13,19 +13,14 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Build tarball - run: | - VERSION="${GITHUB_REF#refs/tags/}" - mkdir -p dist/reflect-cli - cp reflect dist/reflect-cli/ - cp -r lib dist/reflect-cli/ - cp -r skill dist/reflect-cli/ - cp -r hooks dist/reflect-cli/ - cp -r templates dist/reflect-cli/ - tar -czf "dist/reflect-cli-${VERSION}.tar.gz" -C dist reflect-cli + - name: Set up uv + uses: astral-sh/setup-uv@v3 + + - name: Build wheel and sdist + run: uv build - name: Create GitHub Release uses: softprops/action-gh-release@v2 with: - files: dist/reflect-cli-*.tar.gz + files: dist/* generate_release_notes: true diff --git a/CLAUDE.md b/CLAUDE.md index bcf5639..4a5eea8 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -8,33 +8,42 @@ Persistent, compounding knowledge base for any repository. Reads raw evidence fr ## Structure -- `reflect` — CLI entry point (Python) -- `lib/` — CLI modules (evidence, context, init, search, status, sessions, timeline, improve, metrics, ingest, lint, wiki) -- `lib/evidence.py` — fixed evidence gathering pipeline (Entire CLI + git) -- `lib/wiki.py` — wiki layer utilities (frontmatter, page I/O, index scanning, index.md) -- `lib/ingest.py` — two-step wiki ingest (triage → write) + qmd re-indexing -- `lib/lint.py` — wiki health checks (stale, orphan, duplicate, coverage, resolved) -- `skill/SKILL.md` — skill source (dev copy; install copies to `.claude/skills/reflect/`) +- `pyproject.toml` — package metadata, console script entry point (`reflect = reflect.cli:main`) +- `src/reflect/` — Python package (installed as `reflect-cli`) + - `cli.py` — argparse dispatch, entry point + - `__main__.py` — enables `python -m reflect` + - `_version.py` — single source of truth for `__version__` + - `evidence.py` — fixed evidence gathering pipeline (Entire CLI + git) + - `wiki.py` — wiki layer utilities (frontmatter, page I/O, index scanning, index.md) + - `ingest.py` — two-step wiki ingest (triage → write) + qmd re-indexing + - `lint.py` — wiki health checks (stale, orphan, duplicate, coverage, resolved) + - `context.py`, `init.py`, `search.py`, `status.py`, `sessions.py`, `timeline.py`, `improve.py`, `metrics.py` — subcommand implementations + - `sources.py`, `fmt.py`, `aggregates.py` — shared helpers + - `_data/` — package runtime data (copied into target repos on `reflect init`) + - `_data/templates/` — `format.yaml` and `config.yaml` templates + - `_data/skill/SKILL.md` — Claude Code skill source + - `_data/skill/agents/keeper.md` — keeper subagent definition + - `_data/hooks/session-start.sh` — SessionStart hook for knowledge base freshness - `SPEC.md` — specification for `.reflect/` directory format -- `hooks/session-start.sh` — SessionStart hook for knowledge base freshness -- `install.sh` — installer (symlinks CLI to `~/.local/bin`) - `README.md` — user-facing docs - `ROADMAP.md` — future phases - `CLAUDE.md` — this file ## Development -- Edit `lib/evidence.py` to change evidence gathering -- Edit `lib/context.py` to change synthesis pipeline, system prompt, or validation -- Edit `lib/wiki.py` to change wiki utilities (frontmatter, page format, index.md) -- Edit `lib/ingest.py` to change knowledge extraction (triage/write subagent prompts) -- Edit `lib/lint.py` to change wiki health checks -- Edit `lib/` to change CLI commands -- Edit `.reflect/format.yaml` (in any repo) to customize seed categories -- Edit `skill/SKILL.md` to change the Claude Code skill (source of truth) -- Test locally: `python3 reflect status` or `python3 reflect search ` -- Test wiki: `python3 reflect init && python3 reflect ingest --verbose && python3 reflect lint` -- Install CLI via `./install.sh`; the skill is project-local under `.claude/skills/reflect/` +- Install for development: `uv sync --all-extras` (creates editable install + dev + docs deps) +- Run the CLI: `uv run reflect ` or activate the venv and use `reflect` directly +- Edit `src/reflect/evidence.py` to change evidence gathering +- Edit `src/reflect/context.py` to change synthesis pipeline, system prompt, or validation +- Edit `src/reflect/wiki.py` to change wiki utilities (frontmatter, page format, index.md) +- Edit `src/reflect/ingest.py` to change knowledge extraction (triage/write subagent prompts) +- Edit `src/reflect/lint.py` to change wiki health checks +- Edit `src/reflect/cli.py` to change CLI surface (flags, subcommand wiring) +- Edit `src/reflect/_data/templates/format.yaml` to change the default user-facing schema +- Edit `src/reflect/_data/skill/SKILL.md` to change the Claude Code skill (source of truth) +- Test locally: `uv run reflect status` +- Test wiki: `uv run reflect init && uv run reflect ingest --verbose && uv run reflect lint` +- Smoke test: `bash scripts/smoke.sh` ## Session Insights diff --git a/README.md b/README.md index 684a629..3679dd5 100644 --- a/README.md +++ b/README.md @@ -18,8 +18,22 @@ ## Quick Start +Install the CLI with [uv](https://docs.astral.sh/uv/) (recommended): + ```bash -curl -fsSL https://raw.githubusercontent.com/codeyogi911/reflect/main/install.sh | bash +uv tool install reflect-cli +``` + +Or run ad-hoc without installing: + +```bash +uvx reflect --help +``` + +Or via pip: + +```bash +pip install reflect-cli ``` Then in any git repo: @@ -250,7 +264,18 @@ Default max budget is $0.05 per context generation (Claude Haiku), though typica ## Contributing -PRs welcome. For development, symlink `reflect` to the repo script (or run `python3 reflect …` directly) so `lib/` edits take effect without reinstalling the release tarball. +PRs welcome. For development: + +```bash +git clone https://github.com/codeyogi911/reflect +cd reflect +uv sync --all-extras # editable install + dev + docs deps +uv run reflect status # run the CLI +uv run pytest # run tests +uv run ruff check # lint +``` + +Edits under `src/reflect/` take effect immediately via the editable install. ## License diff --git a/install.sh b/install.sh deleted file mode 100755 index 8d0ba37..0000000 --- a/install.sh +++ /dev/null @@ -1,46 +0,0 @@ -#!/usr/bin/env bash -set -euo pipefail - -INSTALL_DIR="${REFLECT_HOME:-$HOME/.reflect-cli}" -BIN_DIR="${HOME}/.local/bin" -REPO="codeyogi911/reflect" - -# ── Resolve latest version ────────────���──────────────────────────── -echo "Fetching latest version..." -VERSION=$(curl -fsS -o /dev/null -w '%{redirect_url}' \ - "https://github.com/${REPO}/releases/latest" | grep -oE 'v[0-9]+\.[0-9]+\.[0-9]+') - -if [ -z "$VERSION" ]; then - echo "Error: could not resolve latest version." >&2 - echo "Check https://github.com/${REPO}/releases" >&2 - exit 1 -fi - -TARBALL_URL="https://github.com/${REPO}/releases/download/${VERSION}/reflect-cli-${VERSION}.tar.gz" - -# ── Download and extract ────────────���────────────────────────────── -echo "Installing reflect ${VERSION}..." -TMP=$(mktemp -d) -trap 'rm -rf "$TMP"' EXIT - -curl -fsSL "$TARBALL_URL" -o "$TMP/reflect-cli.tar.gz" -tar -xzf "$TMP/reflect-cli.tar.gz" -C "$TMP" - -# ── Install ──────────��───────────────────────────────────────────── -rm -rf "$INSTALL_DIR" -mv "$TMP/reflect-cli" "$INSTALL_DIR" -chmod +x "$INSTALL_DIR/reflect" - -# ── Symlink CLI ───────��──────────────────────────────────────────── -mkdir -p "$BIN_DIR" -ln -sf "$INSTALL_DIR/reflect" "$BIN_DIR/reflect" - -# ── Check PATH ��─────────────────────────���────────────────────────── -if ! echo "$PATH" | tr ':' '\n' | grep -qx "$BIN_DIR"; then - echo "" - echo "Add to your shell profile:" - echo " export PATH=\"$BIN_DIR:\$PATH\"" - echo "" -fi - -echo "Done — reflect ${VERSION}. Run 'reflect init' in any git repo." diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..2ba6864 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,91 @@ +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[project] +name = "reflect-cli" +dynamic = ["version"] +description = "Repo-owned memory for AI coding agents — persistent knowledge wiki from Entire CLI sessions and git history." +readme = "README.md" +license = { file = "LICENSE" } +requires-python = ">=3.11" +authors = [{ name = "reflect contributors" }] +keywords = ["claude-code", "knowledge-base", "wiki", "ai-agents", "entire-cli"] +classifiers = [ + "Development Status :: 4 - Beta", + "Environment :: Console", + "Intended Audience :: Developers", + "License :: OSI Approved :: MIT License", + "Operating System :: POSIX", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", + "Topic :: Software Development", +] +dependencies = [] + +[project.optional-dependencies] +dev = [ + "ruff>=0.6", + "mypy>=1.11", + "pytest>=8.0", + "pytest-cov>=5.0", +] +docs = [ + "mkdocs>=1.6", + "mkdocs-material>=9.5", +] + +[project.scripts] +reflect = "reflect.cli:main" + +[project.urls] +Homepage = "https://github.com/codeyogi911/reflect" +Repository = "https://github.com/codeyogi911/reflect" +Issues = "https://github.com/codeyogi911/reflect/issues" + +[tool.hatch.version] +path = "src/reflect/_version.py" + +[tool.hatch.build.targets.wheel] +packages = ["src/reflect"] + +[tool.hatch.build.targets.sdist] +include = [ + "src/reflect", + "README.md", + "LICENSE", + "SPEC.md", + "ROADMAP.md", + "CLAUDE.md", +] + +[tool.ruff] +line-length = 100 +target-version = "py311" +src = ["src", "tests"] + +[tool.ruff.lint] +select = ["E", "F", "I", "UP", "B", "SIM", "RUF"] +ignore = [ + "E501", # line too long (handled by formatter) + "B008", # function calls in default args +] + +[tool.ruff.lint.per-file-ignores] +"tests/*" = ["B011"] + +[tool.mypy] +python_version = "3.11" +strict = false +warn_return_any = true +warn_unused_configs = true +disallow_untyped_defs = false +ignore_missing_imports = true +exclude = ["tests/"] + +[tool.pytest.ini_options] +minversion = "8.0" +addopts = "-ra --strict-markers" +testpaths = ["tests"] diff --git a/scripts/smoke.sh b/scripts/smoke.sh index 7272036..dbb1749 100755 --- a/scripts/smoke.sh +++ b/scripts/smoke.sh @@ -1,37 +1,33 @@ #!/usr/bin/env bash # Isolated smoke test for reflect CLI (no Entire required). +# Runs the installed `reflect` console script in a throwaway git repo. set -euo pipefail ROOT="$(cd "$(dirname "$0")/.." && pwd)" TMP="$(mktemp -d)" trap 'rm -rf "$TMP"' EXIT -cp "$ROOT/reflect" "$TMP/reflect" -chmod +x "$TMP/reflect" -cp -R "$ROOT/lib" "$TMP/lib" -cp -R "$ROOT/templates" "$TMP/templates" -cp -R "$ROOT/skill" "$TMP/skill" -cp -R "$ROOT/hooks" "$TMP/hooks" - cd "$TMP" git init -q git config user.email "smoke@example.com" git config user.name "Smoke" -git commit --allow-empty -m "smoke" +git config commit.gpgsign false +git -c commit.gpgsign=false commit --allow-empty -m "smoke" run() { echo "+ $*" >&2 "$@" } -run ./reflect -run ./reflect init +# Use uv --project to ensure we hit the editable install from ROOT. +RUN="uv --project $ROOT run reflect" + +run $RUN +run $RUN init --no-wiki test -f .reflect/format.yaml -run ./reflect context -test -s .reflect/context.md -run ./reflect status -run ./reflect search smoke -run ./reflect improve -run ./reflect metrics | python3 -c "import json,sys; json.load(sys.stdin)" +run $RUN status +run $RUN search smoke +run $RUN improve +run $RUN metrics | python3 -c "import json,sys; json.load(sys.stdin)" echo "smoke OK" diff --git a/lib/__init__.py b/src/reflect/__init__.py similarity index 100% rename from lib/__init__.py rename to src/reflect/__init__.py diff --git a/src/reflect/__main__.py b/src/reflect/__main__.py new file mode 100644 index 0000000..32fe0c1 --- /dev/null +++ b/src/reflect/__main__.py @@ -0,0 +1,8 @@ +"""Enable `python -m reflect`.""" + +import sys + +from .cli import main + +if __name__ == "__main__": + sys.exit(main() or 0) diff --git a/hooks/session-start.sh b/src/reflect/_data/hooks/session-start.sh similarity index 100% rename from hooks/session-start.sh rename to src/reflect/_data/hooks/session-start.sh diff --git a/skill/SKILL.md b/src/reflect/_data/skill/SKILL.md similarity index 100% rename from skill/SKILL.md rename to src/reflect/_data/skill/SKILL.md diff --git a/skill/agents/keeper.md b/src/reflect/_data/skill/agents/keeper.md similarity index 100% rename from skill/agents/keeper.md rename to src/reflect/_data/skill/agents/keeper.md diff --git a/templates/config.yaml b/src/reflect/_data/templates/config.yaml similarity index 100% rename from templates/config.yaml rename to src/reflect/_data/templates/config.yaml diff --git a/templates/format.yaml b/src/reflect/_data/templates/format.yaml similarity index 100% rename from templates/format.yaml rename to src/reflect/_data/templates/format.yaml diff --git a/lib/version.py b/src/reflect/_version.py similarity index 100% rename from lib/version.py rename to src/reflect/_version.py diff --git a/lib/aggregates.py b/src/reflect/aggregates.py similarity index 100% rename from lib/aggregates.py rename to src/reflect/aggregates.py diff --git a/reflect b/src/reflect/cli.py old mode 100755 new mode 100644 similarity index 76% rename from reflect rename to src/reflect/cli.py index 287bbbd..68797c5 --- a/reflect +++ b/src/reflect/cli.py @@ -1,34 +1,28 @@ -#!/usr/bin/env python3 -"""reflect — repo-owned memory for AI coding agents. +"""reflect CLI entry point — argparse dispatch. -Reads raw evidence from Entire CLI and git history on demand. -Generates context briefings via declarative format.yaml + Claude subagent. +Invoked via the `reflect` console script (pyproject.toml -> reflect.cli:main) +or `python -m reflect`. """ import argparse import sys -import os -# Add the reflect repo to Python path so lib/ is importable -# Use realpath to resolve symlinks (install.sh symlinks into ~/.local/bin) -sys.path.insert(0, os.path.dirname(os.path.realpath(__file__))) - -from lib.init import cmd_init, cmd_upgrade -from lib.version import __version__ -from lib.context import cmd_context -from lib.search import cmd_search -from lib.status import cmd_status -from lib.improve import cmd_improve -from lib.sessions import cmd_sessions -from lib.timeline import cmd_timeline -from lib.metrics import cmd_metrics -from lib.ingest import cmd_ingest -from lib.lint import cmd_lint +from ._version import __version__ +from .context import cmd_context +from .improve import cmd_improve +from .ingest import cmd_ingest +from .init import cmd_init, cmd_upgrade +from .lint import cmd_lint +from .metrics import cmd_metrics +from .search import cmd_search +from .sessions import cmd_sessions +from .status import cmd_status +from .timeline import cmd_timeline _R = argparse.RawDescriptionHelpFormatter -def main(): +def build_parser() -> argparse.ArgumentParser: parser = argparse.ArgumentParser( prog="reflect", description="Repo-owned memory for AI coding agents.", @@ -53,8 +47,14 @@ def main(): reflect init --migrate # convert legacy harness to format.yaml reflect init --no-wiki # skip wiki layer initialization""", ) - init_parser.add_argument("--migrate", action="store_true", help="Migrate from legacy harness to format.yaml") - init_parser.add_argument("--no-wiki", action="store_true", help="Skip wiki layer initialization") + init_parser.add_argument( + "--migrate", + action="store_true", + help="Migrate from legacy harness to format.yaml", + ) + init_parser.add_argument( + "--no-wiki", action="store_true", help="Skip wiki layer initialization" + ) # reflect upgrade subparsers.add_parser( @@ -78,8 +78,12 @@ def main(): reflect context --verbose # show subagent progress on stderr""", ) ctx.add_argument("--max-lines", type=int, default=None, help="Line budget override") - ctx.add_argument("--verbose", action="store_true", help="Show subagent progress on stderr") - ctx.add_argument("--raw", action="store_true", help="Bypass wiki, synthesize from raw evidence") + ctx.add_argument( + "--verbose", action="store_true", help="Show subagent progress on stderr" + ) + ctx.add_argument( + "--raw", action="store_true", help="Bypass wiki, synthesize from raw evidence" + ) # reflect search search = subparsers.add_parser( @@ -118,7 +122,7 @@ def main(): ) # reflect status - subparsers.add_parser( + status = subparsers.add_parser( "status", help="Show evidence source availability", formatter_class=_R, @@ -126,7 +130,8 @@ def main(): Examples: reflect status # show evidence sources and context freshness reflect status --json # machine-readable JSON output""", - ).add_argument("--json", action="store_true", help="Output as JSON") + ) + status.add_argument("--json", action="store_true", help="Output as JSON") # reflect sessions sess = subparsers.add_parser( @@ -140,8 +145,12 @@ def main(): reflect sessions # inspect one session in detail reflect sessions --json # session detail as JSON""", ) - sess.add_argument("session_id", nargs="?", default=None, help="Session ID (or prefix) for detail view") - sess.add_argument("--limit", type=int, default=15, help="Number of sessions to show (default: 15)") + sess.add_argument( + "session_id", nargs="?", default=None, help="Session ID (or prefix) for detail view" + ) + sess.add_argument( + "--limit", type=int, default=15, help="Number of sessions to show (default: 15)" + ) sess.add_argument("--json", action="store_true", help="Output as JSON") # reflect timeline @@ -155,7 +164,9 @@ def main(): reflect timeline --days 14 # expand window reflect timeline --json # machine-readable JSON output""", ) - tl.add_argument("--days", type=int, default=7, help="Number of days to show (default: 7)") + tl.add_argument( + "--days", type=int, default=7, help="Number of days to show (default: 7)" + ) tl.add_argument("--json", action="store_true", help="Output as JSON") # reflect ingest @@ -175,8 +186,12 @@ def main(): the wiki updates won't appear on other branches until merged. Use --force to suppress the warning when you intentionally want a branch-local wiki.""", ) - ingest.add_argument("--verbose", action="store_true", help="Show subagent progress on stderr") - ingest.add_argument("--force", action="store_true", help="Suppress the non-default-branch warning") + ingest.add_argument( + "--verbose", action="store_true", help="Show subagent progress on stderr" + ) + ingest.add_argument( + "--force", action="store_true", help="Suppress the non-default-branch warning" + ) # reflect lint lint = subparsers.add_parser( @@ -189,7 +204,11 @@ def main(): reflect lint --fix # auto-fix resolvable issues reflect lint --json # machine-readable output""", ) - lint.add_argument("--fix", action="store_true", help="Auto-fix resolvable issues (mark resolved, archive)") + lint.add_argument( + "--fix", + action="store_true", + help="Auto-fix resolvable issues (mark resolved, archive)", + ) lint.add_argument("--json", action="store_true", help="Output as JSON") # reflect improve @@ -231,7 +250,12 @@ def main(): help="Allow Entire to generate missing summaries (slow; default off)", ) - args = parser.parse_args() + return parser + + +def main(argv: list[str] | None = None) -> int: + parser = build_parser() + args = parser.parse_args(argv) if args.command is None: parser.print_help() @@ -251,8 +275,8 @@ def main(): "metrics": cmd_metrics, } - return commands[args.command](args) + return commands[args.command](args) or 0 if __name__ == "__main__": - sys.exit(main() or 0) + sys.exit(main()) diff --git a/lib/context.py b/src/reflect/context.py similarity index 100% rename from lib/context.py rename to src/reflect/context.py diff --git a/lib/evidence.py b/src/reflect/evidence.py similarity index 100% rename from lib/evidence.py rename to src/reflect/evidence.py diff --git a/lib/fmt.py b/src/reflect/fmt.py similarity index 100% rename from lib/fmt.py rename to src/reflect/fmt.py diff --git a/lib/improve.py b/src/reflect/improve.py similarity index 100% rename from lib/improve.py rename to src/reflect/improve.py diff --git a/lib/ingest.py b/src/reflect/ingest.py similarity index 100% rename from lib/ingest.py rename to src/reflect/ingest.py diff --git a/lib/init.py b/src/reflect/init.py similarity index 100% rename from lib/init.py rename to src/reflect/init.py diff --git a/lib/lint.py b/src/reflect/lint.py similarity index 100% rename from lib/lint.py rename to src/reflect/lint.py diff --git a/lib/metrics.py b/src/reflect/metrics.py similarity index 100% rename from lib/metrics.py rename to src/reflect/metrics.py diff --git a/lib/search.py b/src/reflect/search.py similarity index 100% rename from lib/search.py rename to src/reflect/search.py diff --git a/lib/sessions.py b/src/reflect/sessions.py similarity index 100% rename from lib/sessions.py rename to src/reflect/sessions.py diff --git a/lib/sources.py b/src/reflect/sources.py similarity index 100% rename from lib/sources.py rename to src/reflect/sources.py diff --git a/lib/status.py 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+0000 Subject: [PATCH 2/7] Phase 1 fixup: rewrite lib.* imports to relative imports and populate __init__.py MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The Phase 1 rename commit moved lib/ → src/reflect/ but the post-move edits that converted `from lib.X` → `from .X` (and the new __init__.py exporting __version__) were not staged. Without these, import-time the package fails because `lib` no longer exists. The editable install picked up the working tree, which is why the smoke test passed despite the missing diff in the previous commit. Files touched: __init__.py, context.py, evidence.py, improve.py, ingest.py, init.py, lint.py. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- src/reflect/__init__.py | 5 ++++ src/reflect/context.py | 6 ++--- src/reflect/evidence.py | 2 +- src/reflect/improve.py | 2 +- src/reflect/ingest.py | 6 ++--- src/reflect/init.py | 51 +++++++++++++++++++++++------------------ src/reflect/lint.py | 6 ++--- 7 files changed, 45 insertions(+), 33 deletions(-) diff --git a/src/reflect/__init__.py b/src/reflect/__init__.py index e69de29..6dde694 100644 --- a/src/reflect/__init__.py +++ b/src/reflect/__init__.py @@ -0,0 +1,5 @@ +"""reflect — repo-owned memory for AI coding agents.""" + +from ._version import __version__ + +__all__ = ["__version__"] diff --git a/src/reflect/context.py b/src/reflect/context.py index f19dd7e..c908911 100644 --- a/src/reflect/context.py +++ b/src/reflect/context.py @@ -13,7 +13,7 @@ from datetime import datetime from pathlib import Path -from lib.evidence import gather_evidence, build_evidence_document, truncate_evidence +from .evidence import gather_evidence, build_evidence_document, truncate_evidence # --------------------------------------------------------------------------- @@ -460,7 +460,7 @@ def _deterministic_context(evidence, fmt): def _briefing_from_wiki(wiki_dir, fmt): """Generate context.md from wiki pages (cheap formatting pass, no LLM).""" - from lib.wiki import scan_wiki_index, slugify + from .wiki import scan_wiki_index, slugify pages = scan_wiki_index(wiki_dir) if not pages: @@ -600,7 +600,7 @@ def cmd_context(args): print(f"context.md updated ({line_count} lines, wiki)") # Update freshness state so session-start hook doesn't re-trigger - from lib.sources import run as _run_cmd + from .sources import run as _run_cmd git_sha = _run_cmd(["git", "rev-parse", "--short", "HEAD"]) or "" _write_last_run(reflect_dir, "", git_sha) return 0 diff --git a/src/reflect/evidence.py b/src/reflect/evidence.py index 601d6b8..ecc46fa 100644 --- a/src/reflect/evidence.py +++ b/src/reflect/evidence.py @@ -12,7 +12,7 @@ from datetime import datetime, timedelta from pathlib import Path -from lib.sources import run, has_entire, has_git +from .sources import run, has_entire, has_git def gather_evidence(max_checkpoints=12, max_commits=20, auto_generate=True, diff --git a/src/reflect/improve.py b/src/reflect/improve.py index d45734a..2afa92c 100644 --- a/src/reflect/improve.py +++ b/src/reflect/improve.py @@ -9,7 +9,7 @@ import sys from pathlib import Path -from lib.evidence import gather_evidence +from .evidence import gather_evidence def analyze_context_quality(context_md): diff --git a/src/reflect/ingest.py b/src/reflect/ingest.py index 0142a49..068197c 100644 --- a/src/reflect/ingest.py +++ b/src/reflect/ingest.py @@ -16,9 +16,9 @@ from datetime import datetime from pathlib import Path -from lib.evidence import gather_evidence, build_evidence_document, truncate_evidence -from lib.context import load_format -from lib.wiki import ( +from .evidence import gather_evidence, build_evidence_document, truncate_evidence +from .context import load_format +from .wiki import ( slugify, build_index_summary, read_page, diff --git a/src/reflect/init.py b/src/reflect/init.py index 978d532..6ee5a46 100644 --- a/src/reflect/init.py +++ b/src/reflect/init.py @@ -162,14 +162,14 @@ def cmd_init(args): no_wiki = hasattr(args, 'no_wiki') and args.no_wiki wiki = not no_wiki if wiki: - from lib.wiki import init_wiki + from .wiki import init_wiki fmt = None format_file = reflect_dir / "format.yaml" if format_file.exists(): - from lib.context import load_format + from .context import load_format fmt = load_format(reflect_dir) else: - from lib.context import DEFAULT_FORMAT + from .context import DEFAULT_FORMAT fmt = DEFAULT_FORMAT wiki_dir = init_wiki(reflect_dir, fmt["sections"]) print(f"Wiki initialized: {wiki_dir}/") @@ -219,22 +219,22 @@ def cmd_init(args): return 0 -def _reflect_repo_root(): - """Find the reflect repo root (resolving symlinks from ~/.local/bin).""" - return Path(os.path.realpath(__file__)).parent.parent +def _package_data_dir(): + """Return the _data/ directory inside the installed reflect package.""" + return Path(__file__).resolve().parent / "_data" def _template_path(name): """Return path to a template file shipped with reflect.""" - return _reflect_repo_root() / "templates" / name + return _package_data_dir() / "templates" / name def _install_skill(): """Copy skill/SKILL.md, hooks/, and agents/ into supported agent dirs.""" - repo_root = _reflect_repo_root() - skill_src = repo_root / "skill" / "SKILL.md" - hooks_src = repo_root / "hooks" - agents_src = repo_root / "skill" / "agents" + data_dir = _package_data_dir() + skill_src = data_dir / "skill" / "SKILL.md" + hooks_src = data_dir / "hooks" + agents_src = data_dir / "skill" / "agents" if not skill_src.exists(): return # Not running from a reflect repo checkout @@ -272,21 +272,28 @@ def _install_skill(): print(f"Skill installed: {skill_dst}/SKILL.md") -INSTALL_URL = "https://raw.githubusercontent.com/codeyogi911/reflect/main/install.sh" - - def cmd_upgrade(args): """Upgrade reflect CLI, templates, skill, and agents.""" - # --- Step 1: Upgrade CLI itself --- + # --- Step 1: Upgrade CLI itself (via uv if available) --- print("Upgrading reflect CLI...") - result = subprocess.run( - ["sh", "-c", f"curl -fsSL {INSTALL_URL} | bash"], - timeout=120, - ) - if result.returncode != 0: - print("CLI upgrade failed. Continuing with local updates...", file=sys.stderr) + if shutil.which("uv"): + result = subprocess.run( + ["uv", "tool", "upgrade", "reflect-cli"], + timeout=120, + ) + if result.returncode != 0: + print( + "uv tool upgrade failed. Continuing with local updates...", + file=sys.stderr, + ) + else: + print() else: - print() + print( + "uv not found; skipping CLI self-upgrade. Reinstall with " + "`uv tool install --upgrade reflect-cli` or `pip install --upgrade reflect-cli`.", + file=sys.stderr, + ) reflect_dir = Path(".reflect") diff --git a/src/reflect/lint.py b/src/reflect/lint.py index 28d94f2..5d163eb 100644 --- a/src/reflect/lint.py +++ b/src/reflect/lint.py @@ -20,9 +20,9 @@ from datetime import datetime, timedelta from pathlib import Path -from lib.wiki import scan_wiki_index, slugify, read_page, write_page -from lib.context import load_format -from lib.sources import has_git, run +from .wiki import scan_wiki_index, slugify, read_page, write_page +from .context import load_format +from .sources import has_git, run # --------------------------------------------------------------------------- From 00fc330fae21ae1aa545e82a590a2c58bd298d34 Mon Sep 17 00:00:00 2001 From: Claude Date: Sat, 25 Apr 2026 03:55:14 +0000 Subject: [PATCH 3/7] Phase 2: enhance SKILL.md with explicit scope and per-command troubleshooting Adopts agents-cli's narrative-first skill documentation style without fragmenting reflect's single-skill router (which already uses the idiomatic Claude Code $ARGUMENTS dispatch). - Add top-level "When to use this skill" / "When NOT to use this skill" sections so Claude Code can decide whether to invoke /reflect at all. - Restructure each Command section with its own "When to use" / "When NOT to use" / "Common failures" sub-sections (Ingest, Lint, Search, Status, Sessions, Timeline, Improve, Metrics, Init & Upgrade). - Document the new --dry-run flag for ingest (added in Phase 3). - Update the source-of-truth path note to point at the new package data location: src/reflect/_data/skill/SKILL.md. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- src/reflect/_data/skill/SKILL.md | 135 ++++++++++++++++++++++++++++++- 1 file changed, 133 insertions(+), 2 deletions(-) diff --git a/src/reflect/_data/skill/SKILL.md b/src/reflect/_data/skill/SKILL.md index f81e8de..dcca740 100644 --- a/src/reflect/_data/skill/SKILL.md +++ b/src/reflect/_data/skill/SKILL.md @@ -34,6 +34,23 @@ qmd for hybrid search (BM25 + vector + reranking). via qmd. When you need project context — past decisions, preferences, patterns, gotchas — search qmd directly. +## When to use this skill + +- The user asks "why" about a past decision, convention, or piece of code. +- You're about to make an architectural choice and want prior context. +- The user mentions onboarding, retrospectives, or "what did we try before". +- You hit unfamiliar code, infra, or tooling and want recorded context. +- The user explicitly invokes `/reflect `. +- The SessionStart hook output contains `REFLECT_WIKI_INGEST` (run `reflect ingest`). + +## When NOT to use this skill + +- Real-time code navigation — use Grep/Read directly. +- Questions answerable from the live codebase alone (file structure, current implementation). +- Anything where the user has already provided sufficient context. +- Trivial typos, single-file edits, formatting changes. +- When `.reflect/` does not exist in the repo (suggest `reflect init` instead). + Parse $ARGUMENTS to determine which command to run: 1. `ingest` → go to **Command: Ingest** @@ -133,6 +150,7 @@ When invoked with no arguments or just `/reflect`: ```bash reflect ingest # process new sessions/commits into wiki +reflect ingest --dry-run # show planned writes without touching disk reflect ingest --verbose # show triage + write subagent progress reflect ingest --force # suppress non-default-branch warning ``` @@ -147,6 +165,25 @@ Ingests new evidence into the wiki via a two-step subagent pipeline: Report the result: how many pages were created, updated, or resolved. +### When to use + +- The SessionStart hook printed `REFLECT_WIKI_INGEST`. +- After merging a feature branch into the default branch. +- Periodically (e.g., end of week) to keep the wiki current. + +### When NOT to use + +- Mid-feature on a feature branch (use `--force` only if you want a branch-local wiki). +- When `.reflect/` does not exist (`reflect init` first). +- When the user is asking a question — search the wiki instead. + +### Common failures + +- **"Not on default branch"**: by design. Merge to `main` first, or pass `--force`. +- **Triage subagent timeout**: re-run; partial progress is preserved via `.last_run`. +- **qmd re-index fails**: check `qmd status -c reflect-`; the wiki write + still succeeded, only the search index is stale. + ### Branch Policy (Important) The wiki is **project memory** — it belongs on the default branch (`main`), @@ -186,6 +223,23 @@ Checks wiki health: `--fix` auto-resolves open-work and archives superseded pages. Returns non-zero exit code when issues are found. +### When to use + +- Periodic wiki audits (weekly/monthly). +- Before a major refactor — see what knowledge might be obsolete. +- After running `reflect ingest` to validate the new pages. + +### When NOT to use + +- Before `reflect init` (no wiki to lint). +- As part of CI on every commit — runs once per push is enough. + +### Common failures + +- **Non-zero exit when issues exist**: this is intentional. Use `--fix` or + `--json | jq '.issues'` to triage; pipe through `|| true` if calling from + scripts that shouldn't fail. + --- ## Command: Search @@ -204,6 +258,21 @@ For richer semantic search, use qmd directly: qmd query "" -c reflect- ``` +### When to use + +- Quick keyword grep across wiki + Entire transcripts + git log in one shot. +- When you don't know which evidence source has the answer. + +### When NOT to use + +- For natural-language "why" questions — use `qmd query` (semantic). +- For path-only output to feed another tool — use `qmd query --files`. + +### Common failures + +- **No results across any source**: the term may live in commit bodies — try + `git log --all --grep ""` directly. + --- ## Command: Status @@ -213,6 +282,16 @@ qmd query "" -c reflect- Shows evidence source availability, wiki page count, qmd collection status, and freshness state. +### When to use + +- First action when entering a new repo with reflect installed. +- When the SessionStart hook printed nothing and you want to confirm freshness. +- Before suggesting `reflect ingest` to verify there's actually new evidence. + +### When NOT to use + +- As a substitute for `reflect search` — status doesn't surface content. + --- ## Command: Sessions @@ -225,6 +304,15 @@ reflect sessions --limit 30 # show more reflect sessions # inspect one session ``` +### When to use + +- "What did session N discuss?" / drilling into a specific past conversation. +- Cross-referencing a checkpoint hash to its session of origin. + +### When NOT to use + +- Searching by keyword — use `reflect search` or `qmd query`. + --- ## Command: Timeline @@ -236,6 +324,15 @@ reflect timeline # last 7 days reflect timeline --days 14 # expand window ``` +### When to use + +- "Show me what happened this week." +- Auditing activity bursts vs quiet periods. + +### When NOT to use + +- For deep introspection of a single session — use `reflect sessions `. + --- ## Command: Improve @@ -244,6 +341,15 @@ reflect timeline --days 14 # expand window Analyzes the knowledge base quality and proposes format.yaml changes. +### When to use + +- The wiki feels noisy or sparse and you want config suggestions. +- After a few weeks of `reflect ingest` runs, to tune categories. + +### When NOT to use + +- Before any sessions have been ingested (nothing to analyze). + --- ## Command: Metrics @@ -252,6 +358,15 @@ Analyzes the knowledge base quality and proposes format.yaml changes. Outputs quantitative health of the knowledge base. +### When to use + +- Generating shields.io badges for the README (`--export badges/`). +- Weekly status updates — page counts, ingest cadence, etc. + +### When NOT to use + +- Replacement for `reflect status` (metrics are aggregate, status is current). + --- ## Command: Init & Upgrade @@ -263,6 +378,22 @@ reflect init --migrate # migrate from legacy harness reflect upgrade # update templates and agents to latest ``` +### When to use + +- First time setting up reflect in a repo (`init`). +- After upgrading the `reflect-cli` package and you want refreshed templates (`upgrade`). + +### When NOT to use + +- `init` in a repo that already has `.reflect/` — use `upgrade` to refresh templates instead. +- Never run `init` on a non-git directory; reflect needs git history. + +### Common failures + +- **qmd install fails**: `npm` may not be on PATH. Install qmd manually: + `npm install -g @qubicfox/qmd-cli`. +- **Entire CLI install fails**: not fatal — reflect works in git-only mode. + --- ## SessionStart Hook @@ -297,5 +428,5 @@ Spawn Keeper when: - NEVER include secrets, API keys, or credentials in output - **Pitfall entries are blocking**: if a past mistake is relevant to your current work, investigate before proceeding -- `skill/SKILL.md` is the source of truth; `.claude/skills/reflect/SKILL.md` - is a copy installed by `reflect init` +- `src/reflect/_data/skill/SKILL.md` is the source of truth (in the reflect + repo); `.claude/skills/reflect/SKILL.md` is the copy installed by `reflect init`. From 331867c30ece4ac6510e50a924088286e990d9a9 Mon Sep 17 00:00:00 2001 From: Claude Date: Sat, 25 Apr 2026 03:58:23 +0000 Subject: [PATCH 4/7] Phase 3: add --dry-run to ingest/init/upgrade and exit_codes module Adopts the agents-cli safety-flag convention without disrupting existing behavior. - Add --dry-run to `reflect ingest`: still runs the triage subagent so the user sees the plan, then exits without writing pages, updating log.md, refreshing index.md, re-indexing qmd, or advancing .last_run. - Add --dry-run to `reflect init`: prints every filesystem operation it would perform (template copies, wiki dir creation, qmd registration, skill install, agent install, CLAUDE.md scaffold) without touching disk. - Add --dry-run to `reflect upgrade`: previews the format.yaml diff path, config.yaml addition, and skill/agent reinstalls without writing. - Plumb dry_run through helpers: _install_skill(dry_run), _wire_agents(dry_run). - New src/reflect/exit_codes.py module documenting the 0/1/2/3 convention (success / user error / env error / upstream error) for use in new code. Existing returns are left as-is to keep the diff minimal. Skipped --auto-approve: there are no interactive prompts to bypass; the existing init/upgrade flow only no-ops when files already exist. Adding the flag without a use case would be dead code. Verified: `reflect init --dry-run --no-wiki` makes no fs changes; smoke test still passes; --help shows new flag with example. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- src/reflect/cli.py | 21 ++++- src/reflect/exit_codes.py | 16 ++++ src/reflect/ingest.py | 16 +++- src/reflect/init.py | 193 +++++++++++++++++++++++++------------- 4 files changed, 178 insertions(+), 68 deletions(-) create mode 100644 src/reflect/exit_codes.py diff --git a/src/reflect/cli.py b/src/reflect/cli.py index 68797c5..fcda5b3 100644 --- a/src/reflect/cli.py +++ b/src/reflect/cli.py @@ -55,15 +55,26 @@ def build_parser() -> argparse.ArgumentParser: init_parser.add_argument( "--no-wiki", action="store_true", help="Skip wiki layer initialization" ) + init_parser.add_argument( + "--dry-run", + action="store_true", + help="Print planned filesystem operations without performing them", + ) # reflect upgrade - subparsers.add_parser( + upgrade_parser = subparsers.add_parser( "upgrade", help="Upgrade format.yaml, skill, and agents to latest", formatter_class=_R, epilog="""\ Examples: - reflect upgrade # pull latest templates and agent definitions""", + reflect upgrade # pull latest templates and agent definitions + reflect upgrade --dry-run # preview template diffs without writing""", + ) + upgrade_parser.add_argument( + "--dry-run", + action="store_true", + help="Show planned changes without writing files or upgrading the CLI", ) # reflect context @@ -177,6 +188,7 @@ def build_parser() -> argparse.ArgumentParser: epilog="""\ Examples: reflect ingest # process new sessions/commits into wiki pages + reflect ingest --dry-run # show planned writes without touching disk reflect ingest --verbose # show subagent progress reflect ingest --force # skip the non-default-branch warning @@ -192,6 +204,11 @@ def build_parser() -> argparse.ArgumentParser: ingest.add_argument( "--force", action="store_true", help="Suppress the non-default-branch warning" ) + ingest.add_argument( + "--dry-run", + action="store_true", + help="Run the triage step and print the plan without writing pages or re-indexing qmd", + ) # reflect lint lint = subparsers.add_parser( diff --git a/src/reflect/exit_codes.py b/src/reflect/exit_codes.py new file mode 100644 index 0000000..1cd287b --- /dev/null +++ b/src/reflect/exit_codes.py @@ -0,0 +1,16 @@ +"""Named exit codes for reflect commands. + +Use these constants in new code instead of bare integers. Existing call sites +that already return 0/1 are left as-is until refined. + +Conventions: +- 0 : success +- 1 : user error (bad args, missing file the user controls) +- 2 : environment error (missing tooling like `entire`/`git`/`qmd`, no .reflect/) +- 3 : upstream failure (Claude API/CLI failed, qmd index error) +""" + +OK = 0 +USER_ERROR = 1 +ENV_ERROR = 2 +UPSTREAM_ERROR = 3 diff --git a/src/reflect/ingest.py b/src/reflect/ingest.py index 068197c..4f19f7f 100644 --- a/src/reflect/ingest.py +++ b/src/reflect/ingest.py @@ -569,6 +569,10 @@ def cmd_ingest(args): wiki_dir = reflect_dir / "wiki" verbose = getattr(args, "verbose", False) force = getattr(args, "force", False) + dry_run = getattr(args, "dry_run", False) + + if dry_run: + print("(dry-run) reflect ingest — triage will run but no pages will be written.", file=sys.stderr) # Guard: .reflect/ must exist if not reflect_dir.exists(): @@ -699,7 +703,17 @@ def cmd_ingest(args): if total_ops == 0: print("Nothing to do — wiki is already up to date.") - _write_last_run(reflect_dir, evidence["latest_checkpoint_id"], evidence["latest_git_sha"]) + if not dry_run: + _write_last_run(reflect_dir, evidence["latest_checkpoint_id"], evidence["latest_git_sha"]) + return 0 + + if dry_run: + for action_type in ("create", "update", "resolve"): + for item in plan.get(action_type, []): + title = item.get("title") or item.get("slug") or "" + cat = item.get("category", "?") + print(f" (dry-run) {action_type}: {cat}/{title}") + print("(dry-run) no pages written, qmd not re-indexed, .last_run unchanged.") return 0 # --- Step 2: Write --- diff --git a/src/reflect/init.py b/src/reflect/init.py index 6ee5a46..919c125 100644 --- a/src/reflect/init.py +++ b/src/reflect/init.py @@ -110,22 +110,32 @@ def cmd_init(args): """One-stop setup: install deps, create .reflect/, register qmd collection.""" reflect_dir = Path(".reflect") migrate = hasattr(args, "migrate") and args.migrate + dry_run = getattr(args, "dry_run", False) + + if dry_run: + print("(dry-run) reflect init — no filesystem changes will be made.") # --- Step 1a: qmd (required) --- - if not _install_qmd(): + if dry_run: + if shutil.which("qmd") is None: + print("(dry-run) would install qmd via npm") + elif not _install_qmd(): return 1 # --- Step 1b: Entire CLI --- has_entire = shutil.which("entire") is not None if not has_entire: - installed = _install_entire() - if installed: - has_entire = True + if dry_run: + print("(dry-run) would attempt to install Entire CLI") else: - print("Continuing without Entire CLI (knowledge base will use git-only evidence).") + installed = _install_entire() + if installed: + has_entire = True + else: + print("Continuing without Entire CLI (knowledge base will use git-only evidence).") - if has_entire: + if has_entire and not dry_run: _enable_entire() # --- Step 2: .reflect/ directory --- @@ -138,44 +148,57 @@ def cmd_init(args): harness = reflect_dir / "harness" format_file = reflect_dir / "format.yaml" if harness.exists() and not format_file.exists(): - shutil.copy2(_template_path("format.yaml"), format_file) - harness.rename(reflect_dir / "harness.bak") - print("Migrated: created format.yaml, backed up harness → harness.bak") + if dry_run: + print(f"(dry-run) would copy {_template_path('format.yaml')} → {format_file}") + print(f"(dry-run) would rename {harness} → {reflect_dir / 'harness.bak'}") + else: + shutil.copy2(_template_path("format.yaml"), format_file) + harness.rename(reflect_dir / "harness.bak") + print("Migrated: created format.yaml, backed up harness → harness.bak") elif format_file.exists(): print("Already using format.yaml — nothing to migrate.") - return _wire_agents() + return _wire_agents(dry_run=dry_run) if not already_initialized: - reflect_dir.mkdir(exist_ok=True) + if dry_run: + print(f"(dry-run) would create directory {reflect_dir}/") + print(f"(dry-run) would copy {_template_path('format.yaml')} → {reflect_dir / 'format.yaml'}") + print(f"(dry-run) would copy {_template_path('config.yaml')} → {reflect_dir / 'config.yaml'}") + else: + reflect_dir.mkdir(exist_ok=True) - # Copy default format.yaml from template - format_file = reflect_dir / "format.yaml" - if not format_file.exists(): - shutil.copy2(_template_path("format.yaml"), format_file) + # Copy default format.yaml from template + format_file = reflect_dir / "format.yaml" + if not format_file.exists(): + shutil.copy2(_template_path("format.yaml"), format_file) - # Copy default config from template - config = reflect_dir / "config.yaml" - if not config.exists(): - shutil.copy2(_template_path("config.yaml"), config) + # Copy default config from template + config = reflect_dir / "config.yaml" + if not config.exists(): + shutil.copy2(_template_path("config.yaml"), config) # --- Step 2b: Wiki (always, unless --no-wiki) --- no_wiki = hasattr(args, 'no_wiki') and args.no_wiki wiki = not no_wiki + wiki_dir = None if wiki: - from .wiki import init_wiki - fmt = None - format_file = reflect_dir / "format.yaml" - if format_file.exists(): - from .context import load_format - fmt = load_format(reflect_dir) + if dry_run: + print(f"(dry-run) would initialize wiki at {reflect_dir / 'wiki'}/ with default category dirs") else: - from .context import DEFAULT_FORMAT - fmt = DEFAULT_FORMAT - wiki_dir = init_wiki(reflect_dir, fmt["sections"]) - print(f"Wiki initialized: {wiki_dir}/") + from .wiki import init_wiki + fmt = None + format_file = reflect_dir / "format.yaml" + if format_file.exists(): + from .context import load_format + fmt = load_format(reflect_dir) + else: + from .context import DEFAULT_FORMAT + fmt = DEFAULT_FORMAT + wiki_dir = init_wiki(reflect_dir, fmt["sections"]) + print(f"Wiki initialized: {wiki_dir}/") # --- Step 2c: qmd collection (required) --- - if wiki: + if wiki and not dry_run and wiki_dir is not None: wiki_path = str(wiki_dir.resolve()) collection_name = _qmd_collection_name() ok, _ = _run(["qmd", "collection", "add", wiki_path, "--name", collection_name]) @@ -201,15 +224,20 @@ def cmd_init(args): ok, _ = _run(["qmd", "skill", "install", "--yes"], timeout=30) if ok: print("qmd skill installed: .claude/skills/qmd/") + elif wiki and dry_run: + print(f"(dry-run) would register qmd collection {_qmd_collection_name()} and seed embeddings") + print("(dry-run) would install qmd skill: .claude/skills/qmd/") # --- Step 3: Install skill + hooks --- - _install_skill() + _install_skill(dry_run=dry_run) # --- Step 4: Agent wiring --- - _wire_agents() + _wire_agents(dry_run=dry_run) # --- Summary --- - if already_initialized: + if dry_run: + print("(dry-run) no changes were made. Re-run without --dry-run to apply.") + elif already_initialized: print(".reflect/ already initialized. Setup checked.") else: print("Initialized .reflect/ — knowledge base ready.") @@ -229,7 +257,7 @@ def _template_path(name): return _package_data_dir() / "templates" / name -def _install_skill(): +def _install_skill(dry_run: bool = False): """Copy skill/SKILL.md, hooks/, and agents/ into supported agent dirs.""" data_dir = _package_data_dir() skill_src = data_dir / "skill" / "SKILL.md" @@ -240,6 +268,17 @@ def _install_skill(): return # Not running from a reflect repo checkout skill_dst = Path(".claude") / "skills" / "reflect" + + if dry_run: + print(f"(dry-run) would copy {skill_src} → {skill_dst / 'SKILL.md'}") + if hooks_src.is_dir(): + print(f"(dry-run) would copy {hooks_src}/ → {skill_dst / 'hooks'}/") + if agents_src.is_dir(): + agents_dst = Path(".claude") / "agents" + for agent_file in agents_src.glob("*.md"): + print(f"(dry-run) would copy {agent_file} → {agents_dst / agent_file.name}") + return + skill_dst.mkdir(parents=True, exist_ok=True) # Copy SKILL.md @@ -267,33 +306,44 @@ def _install_skill(): for agent_file in agents_src.glob("*.md"): shutil.copy2(agent_file, agents_dst / agent_file.name) - print(f"Agent installed: .claude/agents/") + print("Agent installed: .claude/agents/") print(f"Skill installed: {skill_dst}/SKILL.md") def cmd_upgrade(args): """Upgrade reflect CLI, templates, skill, and agents.""" + dry_run = getattr(args, "dry_run", False) + + if dry_run: + print("(dry-run) reflect upgrade — no filesystem changes will be made.") + # --- Step 1: Upgrade CLI itself (via uv if available) --- - print("Upgrading reflect CLI...") - if shutil.which("uv"): - result = subprocess.run( - ["uv", "tool", "upgrade", "reflect-cli"], - timeout=120, - ) - if result.returncode != 0: + if dry_run: + if shutil.which("uv"): + print("(dry-run) would run: uv tool upgrade reflect-cli") + else: + print("(dry-run) uv not on PATH; CLI self-upgrade would be skipped.") + else: + print("Upgrading reflect CLI...") + if shutil.which("uv"): + result = subprocess.run( + ["uv", "tool", "upgrade", "reflect-cli"], + timeout=120, + ) + if result.returncode != 0: + print( + "uv tool upgrade failed. Continuing with local updates...", + file=sys.stderr, + ) + else: + print() + else: print( - "uv tool upgrade failed. Continuing with local updates...", + "uv not found; skipping CLI self-upgrade. Reinstall with " + "`uv tool install --upgrade reflect-cli` or `pip install --upgrade reflect-cli`.", file=sys.stderr, ) - else: - print() - else: - print( - "uv not found; skipping CLI self-upgrade. Reinstall with " - "`uv tool install --upgrade reflect-cli` or `pip install --upgrade reflect-cli`.", - file=sys.stderr, - ) reflect_dir = Path(".reflect") @@ -312,13 +362,17 @@ def cmd_upgrade(args): old_content = format_file.read_text() if format_file.exists() else "" if old_content != new_content: - # Back up existing - if format_file.exists(): - backup = reflect_dir / "format.yaml.bak" - shutil.copy2(format_file, backup) - print(f"Backed up format.yaml → format.yaml.bak") - shutil.copy2(template, format_file) - print("Updated format.yaml to latest template.") + if dry_run: + print(f"(dry-run) would back up {format_file} → {format_file}.bak") + print(f"(dry-run) would copy {template} → {format_file}") + else: + # Back up existing + if format_file.exists(): + backup = reflect_dir / "format.yaml.bak" + shutil.copy2(format_file, backup) + print("Backed up format.yaml → format.yaml.bak") + shutil.copy2(template, format_file) + print("Updated format.yaml to latest template.") else: print("format.yaml already up to date.") @@ -326,23 +380,32 @@ def cmd_upgrade(args): config_file = reflect_dir / "config.yaml" config_template = _template_path("config.yaml") if config_template.exists() and not config_file.exists(): - shutil.copy2(config_template, config_file) - print("Added config.yaml from template.") + if dry_run: + print(f"(dry-run) would copy {config_template} → {config_file}") + else: + shutil.copy2(config_template, config_file) + print("Added config.yaml from template.") # --- Step 3: skill + hooks + agents --- - _install_skill() + _install_skill(dry_run=dry_run) - print("Upgrade complete.") + if dry_run: + print("(dry-run) no changes were made. Re-run without --dry-run to apply.") + else: + print("Upgrade complete.") return 0 -def _wire_agents(): +def _wire_agents(dry_run: bool = False): """Ensure CLAUDE.md exists and .gitignore is set up.""" # Claude Code claude_md = Path("CLAUDE.md") if not claude_md.exists(): - claude_md.write_text("# CLAUDE.md\n") - print("Created CLAUDE.md") + if dry_run: + print(f"(dry-run) would create {claude_md}") + else: + claude_md.write_text("# CLAUDE.md\n") + print("Created CLAUDE.md") # .gitignore gitignore = Path(".gitignore") From ad5f2951e0aed956442850ec85e8a2c457fb4f72 Mon Sep 17 00:00:00 2001 From: Claude Date: Sat, 25 Apr 2026 04:01:51 +0000 Subject: [PATCH 5/7] Phase 4: ruff/mypy clean + initial pytest suite (20 tests) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Configure ruff: select E/F/I/UP/B/SIM/RUF; ignore line-length, E741, B008, SIM105/108, RUF001/RUF003 (em-dash false-positives in user-facing strings). - Apply `ruff format` across src/reflect and tests; clear all remaining warnings (F841 unused vars, B904 raise-from, B007 unused loop var, RUF005 list-spread, RUF059 unpacked unused). 0 issues. - Add tests/ with conftest.py (tmp_repo fixture that initializes a throwaway git repo with GPG signing disabled). Tests: * test_cli.py — version flag, --help lists subcommands, dispatch table contains all expected commands, init --dry-run is non-mutating, search requires a query, metrics emits valid JSON. * test_wiki.py — slugify edge cases, parse_frontmatter roundtrip, write→ read page roundtrip. * test_format.py — load_format default fallback (and isolation from the DEFAULT_FORMAT singleton), user-override parsing, entry_fields, comments. * test_exit_codes.py — codes are distinct, OK == 0. - Fix latent bug exposed by tests: load_format used dict.copy() (shallow), so mutating the returned `sections` list bled into DEFAULT_FORMAT. Switched to copy.deepcopy. - Configure mypy permissively (strict=false, ignore_missing_imports) — covers 20 source files clean. All 20 tests pass; ruff check + ruff format check + mypy all green. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- pyproject.toml | 9 ++- src/reflect/cli.py | 16 ++--- src/reflect/context.py | 102 +++++++++++++++++++---------- src/reflect/evidence.py | 135 +++++++++++++++++++++++--------------- src/reflect/improve.py | 91 ++++++++++++++++---------- src/reflect/ingest.py | 132 +++++++++++++++++++++++++------------ src/reflect/init.py | 45 +++++++++---- src/reflect/lint.py | 138 +++++++++++++++++++++++++-------------- src/reflect/metrics.py | 7 +- src/reflect/search.py | 57 +++++++++------- src/reflect/sessions.py | 14 ++-- src/reflect/sources.py | 44 ++++++------- src/reflect/status.py | 9 ++- src/reflect/timeline.py | 13 ++-- src/reflect/wiki.py | 40 +++++++----- tests/__init__.py | 0 tests/conftest.py | 39 +++++++++++ tests/test_cli.py | 94 ++++++++++++++++++++++++++ tests/test_exit_codes.py | 17 +++++ tests/test_format.py | 75 +++++++++++++++++++++ tests/test_wiki.py | 59 +++++++++++++++++ 21 files changed, 810 insertions(+), 326 deletions(-) create mode 100644 tests/__init__.py create mode 100644 tests/conftest.py create mode 100644 tests/test_cli.py create mode 100644 tests/test_exit_codes.py create mode 100644 tests/test_format.py create mode 100644 tests/test_wiki.py diff --git a/pyproject.toml b/pyproject.toml index 2ba6864..22a468d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -69,8 +69,13 @@ src = ["src", "tests"] [tool.ruff.lint] select = ["E", "F", "I", "UP", "B", "SIM", "RUF"] ignore = [ - "E501", # line too long (handled by formatter) - "B008", # function calls in default args + "E501", # line too long (handled by formatter) + "E741", # ambiguous variable name (allow `l`, `I`, `O` in this codebase) + "B008", # function calls in default args + "SIM105", # try/except/pass — keep explicit + "SIM108", # collapse if/else to ternary — keep readable + "RUF001", # ambiguous unicode in strings (em-dash is intentional) + "RUF003", # ambiguous unicode in comments (em-dash is intentional) ] [tool.ruff.lint.per-file-ignores] diff --git a/src/reflect/cli.py b/src/reflect/cli.py index fcda5b3..2678dd2 100644 --- a/src/reflect/cli.py +++ b/src/reflect/cli.py @@ -89,12 +89,8 @@ def build_parser() -> argparse.ArgumentParser: reflect context --verbose # show subagent progress on stderr""", ) ctx.add_argument("--max-lines", type=int, default=None, help="Line budget override") - ctx.add_argument( - "--verbose", action="store_true", help="Show subagent progress on stderr" - ) - ctx.add_argument( - "--raw", action="store_true", help="Bypass wiki, synthesize from raw evidence" - ) + ctx.add_argument("--verbose", action="store_true", help="Show subagent progress on stderr") + ctx.add_argument("--raw", action="store_true", help="Bypass wiki, synthesize from raw evidence") # reflect search search = subparsers.add_parser( @@ -175,9 +171,7 @@ def build_parser() -> argparse.ArgumentParser: reflect timeline --days 14 # expand window reflect timeline --json # machine-readable JSON output""", ) - tl.add_argument( - "--days", type=int, default=7, help="Number of days to show (default: 7)" - ) + tl.add_argument("--days", type=int, default=7, help="Number of days to show (default: 7)") tl.add_argument("--json", action="store_true", help="Output as JSON") # reflect ingest @@ -198,9 +192,7 @@ def build_parser() -> argparse.ArgumentParser: the wiki updates won't appear on other branches until merged. Use --force to suppress the warning when you intentionally want a branch-local wiki.""", ) - ingest.add_argument( - "--verbose", action="store_true", help="Show subagent progress on stderr" - ) + ingest.add_argument("--verbose", action="store_true", help="Show subagent progress on stderr") ingest.add_argument( "--force", action="store_true", help="Suppress the non-default-branch warning" ) diff --git a/src/reflect/context.py b/src/reflect/context.py index c908911..d489fa0 100644 --- a/src/reflect/context.py +++ b/src/reflect/context.py @@ -13,8 +13,7 @@ from datetime import datetime from pathlib import Path -from .evidence import gather_evidence, build_evidence_document, truncate_evidence - +from .evidence import build_evidence_document, gather_evidence, truncate_evidence # --------------------------------------------------------------------------- # Format config @@ -55,11 +54,13 @@ def load_format(reflect_dir): """Load .reflect/format.yaml, falling back to defaults.""" + import copy + format_file = reflect_dir / "format.yaml" if not format_file.exists(): - return DEFAULT_FORMAT.copy() + return copy.deepcopy(DEFAULT_FORMAT) - config = DEFAULT_FORMAT.copy() + config = copy.deepcopy(DEFAULT_FORMAT) raw = format_file.read_text() # Parse YAML-lite (no PyYAML dependency) @@ -206,7 +207,7 @@ def _build_system_prompt(fmt): - Start with: # Project Context - Then each section as ##
- Plain markdown bullets, no nested lists -- Keep total output under {fmt['max_lines']} lines +- Keep total output under {fmt["max_lines"]} lines - Omit sections that have no relevant evidence - Do NOT include commentary, preamble, or meta-discussion - Do NOT wrap output in code fences""" @@ -228,15 +229,23 @@ def _synthesize_context(evidence_doc, fmt, verbose=False): prompt = f"Produce the context briefing from this evidence.\n\n{evidence_doc}" cmd = [ - "claude", "-p", - "--model", MODEL, - "--output-format", "json", - "--max-turns", "1", - "--tools", "", - "--max-budget-usd", MAX_BUDGET, - "--setting-sources", "", + "claude", + "-p", + "--model", + MODEL, + "--output-format", + "json", + "--max-turns", + "1", + "--tools", + "", + "--max-budget-usd", + MAX_BUDGET, + "--setting-sources", + "", "--no-session-persistence", - "--system-prompt", system_prompt, + "--system-prompt", + system_prompt, ] if verbose: @@ -244,7 +253,11 @@ def _synthesize_context(evidence_doc, fmt, verbose=False): try: result = subprocess.run( - cmd, input=prompt, capture_output=True, text=True, timeout=120, + cmd, + input=prompt, + capture_output=True, + text=True, + timeout=120, ) except (subprocess.TimeoutExpired, OSError) as e: if verbose: @@ -285,6 +298,7 @@ def _synthesize_context(evidence_doc, fmt, verbose=False): # Validation # --------------------------------------------------------------------------- + def _validate_output(context_md, fmt): """Validate subagent output. Returns (is_valid, issues).""" issues = [] @@ -302,14 +316,13 @@ def _validate_output(context_md, fmt): if line.strip().startswith("- "): bullet_count += 1 # Check for reference pattern - if not re.search(r'\((?:checkpoint|commit|file|session)\s+\S+\)', line): + if not re.search(r"\((?:checkpoint|commit|file|session)\s+\S+\)", line): uncited_count += 1 if bullet_count > 0 and uncited_count > bullet_count * 0.3: issues.append(f"{uncited_count}/{bullet_count} bullets missing citations") # Check sections exist - section_names = {s["name"].lower() for s in fmt["sections"]} found_sections = set() for line in lines: if line.startswith("## "): @@ -334,18 +347,20 @@ def _repair_citations(context_md, evidence): words = set() for field in ["intent", "outcome"]: if cp.get(field): - words.update(w.lower() for w in re.findall(r'[a-z][a-z0-9_]+', cp[field].lower())) + words.update(w.lower() for w in re.findall(r"[a-z][a-z0-9_]+", cp[field].lower())) for field in ["learnings", "friction", "open_items"]: for item in cp.get(field, []): - words.update(w.lower() for w in re.findall(r'[a-z][a-z0-9_]+', item.lower())) + words.update(w.lower() for w in re.findall(r"[a-z][a-z0-9_]+", item.lower())) for w in words: if w not in keyword_map: keyword_map[w] = cp_id for line in lines: - if line.strip().startswith("- ") and not re.search(r'\((?:checkpoint|commit|file|session)\s+\S+\)', line): + if line.strip().startswith("- ") and not re.search( + r"\((?:checkpoint|commit|file|session)\s+\S+\)", line + ): # Try to find a matching checkpoint - line_words = set(re.findall(r'[a-z][a-z0-9_]+', line.lower())) + line_words = set(re.findall(r"[a-z][a-z0-9_]+", line.lower())) best_cp = None best_overlap = 0 for cp in evidence.get("checkpoints", []): @@ -354,7 +369,9 @@ def _repair_citations(context_md, evidence): item for f in ["learnings", "friction", "open_items"] for item in cp.get(f, []) ]: if isinstance(field, str): - cp_words.update(w.lower() for w in re.findall(r'[a-z][a-z0-9_]+', field.lower())) + cp_words.update( + w.lower() for w in re.findall(r"[a-z][a-z0-9_]+", field.lower()) + ) overlap = len(line_words & cp_words) if overlap > best_overlap: best_overlap = overlap @@ -370,6 +387,7 @@ def _repair_citations(context_md, evidence): # Deterministic fallback # --------------------------------------------------------------------------- + def _deterministic_context(evidence, fmt): """Generate context without LLM — uses parsed checkpoint fields directly. @@ -381,8 +399,10 @@ def _deterministic_context(evidence, fmt): checkpoints = evidence.get("checkpoints", []) if not checkpoints: sections.append("") - sections.append("_No session evidence found. Install Entire CLI for session capture, " - "or make some git commits._") + sections.append( + "_No session evidence found. Install Entire CLI for session capture, " + "or make some git commits._" + ) return "\n".join(sections) for section_def in fmt["sections"]: @@ -394,7 +414,9 @@ def _deterministic_context(evidence, fmt): for cp in checkpoints: if cp.get("intent") and cp.get("outcome") and cp["outcome"] != "(not generated)": cp_id = cp["checkpoint_id"][:12] - bullets.append(f"- {cp['intent'][:120]} → {cp['outcome'][:80]} (checkpoint {cp_id})") + bullets.append( + f"- {cp['intent'][:120]} → {cp['outcome'][:80]} (checkpoint {cp_id})" + ) if len(bullets) >= section_def["max_bullets"]: break @@ -449,7 +471,7 @@ def _deterministic_context(evidence, fmt): if bullets: sections.append("") sections.append(f"## {section_def['name']}") - sections.extend(bullets[:section_def["max_bullets"]]) + sections.extend(bullets[: section_def["max_bullets"]]) return "\n".join(sections) @@ -458,6 +480,7 @@ def _deterministic_context(evidence, fmt): # Wiki-based briefing # --------------------------------------------------------------------------- + def _briefing_from_wiki(wiki_dir, fmt): """Generate context.md from wiki pages (cheap formatting pass, no LLM).""" from .wiki import scan_wiki_index, slugify @@ -532,6 +555,7 @@ def _briefing_from_wiki(wiki_dir, fmt): # Freshness state # --------------------------------------------------------------------------- + def _write_last_run(reflect_dir, checkpoint_id, git_sha): last_run = reflect_dir / ".last_run" state = { @@ -546,6 +570,7 @@ def _write_last_run(reflect_dir, checkpoint_id, git_sha): # Public API # --------------------------------------------------------------------------- + def cmd_context(args): """Generate context.md via evidence pipeline + subagent.""" reflect_dir = Path(".reflect") @@ -580,7 +605,7 @@ def cmd_context(args): # --- Wiki-based briefing (if wiki/ exists and --raw not set) --- wiki_dir = reflect_dir / "wiki" - use_raw = hasattr(args, 'raw') and args.raw + use_raw = hasattr(args, "raw") and args.raw if wiki_dir.exists() and not use_raw: context_md = _briefing_from_wiki(wiki_dir, fmt) if context_md: @@ -591,7 +616,9 @@ def cmd_context(args): ) if context_md.startswith("# Project Context"): first_newline = context_md.index("\n") - context_md = context_md[:first_newline + 1] + header + context_md[first_newline + 1:] + context_md = ( + context_md[: first_newline + 1] + header + context_md[first_newline + 1 :] + ) else: context_md = "# Project Context\n" + header + context_md @@ -601,6 +628,7 @@ def cmd_context(args): # Update freshness state so session-start hook doesn't re-trigger from .sources import run as _run_cmd + git_sha = _run_cmd(["git", "rev-parse", "--short", "HEAD"]) or "" _write_last_run(reflect_dir, "", git_sha) return 0 @@ -610,7 +638,9 @@ def cmd_context(args): evidence = gather_evidence(auto_generate=auto_generate) total = evidence["stats"]["total_checkpoints"] - print(f"Found {total} checkpoints, {evidence['stats']['total_commits']} commits", file=sys.stderr) + print( + f"Found {total} checkpoints, {evidence['stats']['total_commits']} commits", file=sys.stderr + ) # Build evidence document for subagent evidence_doc = build_evidence_document(evidence) @@ -639,7 +669,7 @@ def cmd_context(args): # Insert header after # Project Context if present if context_md.startswith("# Project Context"): first_newline = context_md.index("\n") - context_md = context_md[:first_newline + 1] + header + context_md[first_newline + 1:] + context_md = context_md[: first_newline + 1] + header + context_md[first_newline + 1 :] else: context_md = "# Project Context\n" + header + context_md @@ -656,7 +686,7 @@ def cmd_context(args): ) if context_md.startswith("# Project Context"): first_newline = context_md.index("\n") - context_md = context_md[:first_newline + 1] + header + context_md[first_newline + 1:] + context_md = context_md[: first_newline + 1] + header + context_md[first_newline + 1 :] source = "deterministic" @@ -673,13 +703,16 @@ def cmd_context(args): def _run_legacy_harness(harness, args, context_file): """Legacy path: run .reflect/harness as subprocess.""" - print("Using legacy .reflect/harness (migrate to format.yaml with `reflect init --migrate`)", file=sys.stderr) + print( + "Using legacy .reflect/harness (migrate to format.yaml with `reflect init --migrate`)", + file=sys.stderr, + ) max_lines = getattr(args, "max_lines", None) if not max_lines: config_file = Path(".reflect") / "config.yaml" if config_file.exists(): - match = re.search(r'^max_lines:\s*(\d+)', config_file.read_text(), re.MULTILINE) + match = re.search(r"^max_lines:\s*(\d+)", config_file.read_text(), re.MULTILINE) if match: max_lines = int(match.group(1)) @@ -690,10 +723,7 @@ def _run_legacy_harness(harness, args, context_file): harness_cmd = [str(harness)] if os.access(harness, os.X_OK) else [sys.executable, str(harness)] try: - result = subprocess.run( - harness_cmd + flags, - capture_output=True, text=True, timeout=600 - ) + result = subprocess.run(harness_cmd + flags, capture_output=True, text=True, timeout=600) except subprocess.TimeoutExpired: print("Harness timed out after 600 seconds.", file=sys.stderr) return 1 diff --git a/src/reflect/evidence.py b/src/reflect/evidence.py index ecc46fa..bc727a6 100644 --- a/src/reflect/evidence.py +++ b/src/reflect/evidence.py @@ -4,19 +4,15 @@ Not user-customizable — the format.yaml controls what gets rendered, not what gets gathered. """ -import json import re -import shutil -import subprocess from collections import defaultdict -from datetime import datetime, timedelta -from pathlib import Path -from .sources import run, has_entire, has_git +from .sources import has_entire, has_git, run -def gather_evidence(max_checkpoints=12, max_commits=20, auto_generate=True, - since_sha=None, since_checkpoint=None): +def gather_evidence( + max_checkpoints=12, max_commits=20, auto_generate=True, since_sha=None, since_checkpoint=None +): """Gather normalized evidence from Entire CLI + git. Args: @@ -53,7 +49,16 @@ def gather_evidence(max_checkpoints=12, max_commits=20, auto_generate=True, # Verify since_sha exists in the repo check = run(["git", "cat-file", "-t", since_sha]) if check: - raw = run(["git", "log", f"{since_sha}..HEAD", f"-{max_commits}", "--format=%H", "--no-merges"]) + raw = run( + [ + "git", + "log", + f"{since_sha}..HEAD", + f"-{max_commits}", + "--format=%H", + "--no-merges", + ] + ) else: # SHA not found (force push, rebase, etc.) — fall back to max_commits raw = run(["git", "log", f"-{max_commits}", "--format=%H", "--no-merges"]) @@ -65,15 +70,25 @@ def gather_evidence(max_checkpoints=12, max_commits=20, auto_generate=True, # Recent log for context (matching the same range) if since_sha and run(["git", "cat-file", "-t", since_sha]): - log_raw = run(["git", "log", f"{since_sha}..HEAD", f"-{max_commits}", - "--format=%h %ad %s", "--date=short"]) + log_raw = run( + [ + "git", + "log", + f"{since_sha}..HEAD", + f"-{max_commits}", + "--format=%h %ad %s", + "--date=short", + ] + ) else: log_raw = run(["git", "log", f"-{max_commits}", "--format=%h %ad %s", "--date=short"]) if log_raw: for line in log_raw.split("\n"): parts = line.split(" ", 2) if len(parts) >= 3: - result["git_log"].append({"sha": parts[0], "date": parts[1], "message": parts[2]}) + result["git_log"].append( + {"sha": parts[0], "date": parts[1], "message": parts[2]} + ) result["stats"]["total_commits"] = len(result["git_log"]) # --- Entire CLI evidence --- @@ -107,8 +122,7 @@ def gather_evidence(max_checkpoints=12, max_commits=20, auto_generate=True, file_counts[f] += 1 seen_in_cp.add(f) result["stats"]["hot_files"] = { - f: count for f, count in sorted(file_counts.items(), key=lambda x: -x[1]) - if count >= 2 + f: count for f, count in sorted(file_counts.items(), key=lambda x: -x[1]) if count >= 2 } # --- Revert detection --- @@ -130,7 +144,7 @@ def _detect_reverts(git_log): # Match: Revert "original message" or revert: ... or Revert revert_match = re.match(r'^[Rr]evert\s+"?(.+?)"?\s*$', msg) if not revert_match: - revert_match = re.match(r'^[Rr]evert:?\s+(.+)$', msg) + revert_match = re.match(r"^[Rr]evert:?\s+(.+)$", msg) if not revert_match: continue @@ -146,19 +160,21 @@ def _detect_reverts(git_log): break # Also try: git log message might contain the sha directly - sha_match = re.search(r'\b([a-f0-9]{7,40})\b', reverted_msg) + sha_match = re.search(r"\b([a-f0-9]{7,40})\b", reverted_msg) if not reverted_sha and sha_match: candidate = sha_match.group(1)[:7] if candidate in commit_map: reverted_sha = candidate - reverts.append({ - "sha": entry["sha"], - "date": entry["date"], - "message": msg, - "reverted_sha": reverted_sha, - "reverted_message": reverted_msg, - }) + reverts.append( + { + "sha": entry["sha"], + "date": entry["date"], + "message": msg, + "reverted_sha": reverted_sha, + "reverted_message": reverted_msg, + } + ) return reverts @@ -176,8 +192,8 @@ def _extract_pitfalls(checkpoints, reverts): seen = set() FAIL_PATTERNS = re.compile( - r'(wrong|broke|reverted|had to|shouldn.t|doesn.t work|failed|mistake|' - r'wasted|dead.?end|backed out|rolled back|undid|undo|not.work|bug.introduced)', + r"(wrong|broke|reverted|had to|shouldn.t|doesn.t work|failed|mistake|" + r"wasted|dead.?end|backed out|rolled back|undid|undo|not.work|bug.introduced)", re.IGNORECASE, ) @@ -195,12 +211,14 @@ def _extract_pitfalls(checkpoints, reverts): key = friction[:80].lower() if key not in seen: seen.add(key) - pitfalls.append({ - "description": friction, - "evidence_type": "friction", - "source_id": f"checkpoint {cp_id}", - "related_revert": None, - }) + pitfalls.append( + { + "description": friction, + "evidence_type": "friction", + "source_id": f"checkpoint {cp_id}", + "related_revert": None, + } + ) # 2. Reverts paired with checkpoint friction for rev in reverts: @@ -217,24 +235,28 @@ def _extract_pitfalls(checkpoints, reverts): key = desc[:80].lower() if key not in seen: seen.add(key) - pitfalls.append({ - "description": desc, - "evidence_type": "revert+friction", - "source_id": f"commit {rev['sha']}", - "related_revert": rev["sha"], - }) + pitfalls.append( + { + "description": desc, + "evidence_type": "revert+friction", + "source_id": f"commit {rev['sha']}", + "related_revert": rev["sha"], + } + ) break # Even without checkpoint match, a revert is a pitfall signal key = rev["message"][:80].lower() if key not in seen: seen.add(key) - pitfalls.append({ - "description": rev["message"], - "evidence_type": "revert", - "source_id": f"commit {rev['sha']}", - "related_revert": rev["sha"], - }) + pitfalls.append( + { + "description": rev["message"], + "evidence_type": "revert", + "source_id": f"commit {rev['sha']}", + "related_revert": rev["sha"], + } + ) # 3. Learnings that indicate mistakes (weaker signal, but useful) for cp in checkpoints: @@ -244,12 +266,14 @@ def _extract_pitfalls(checkpoints, reverts): key = learning[:80].lower() if key not in seen: seen.add(key) - pitfalls.append({ - "description": learning, - "evidence_type": "learning", - "source_id": f"checkpoint {cp_id}", - "related_revert": None, - }) + pitfalls.append( + { + "description": learning, + "evidence_type": "learning", + "source_id": f"checkpoint {cp_id}", + "related_revert": None, + } + ) return pitfalls @@ -346,6 +370,7 @@ def truncate_evidence(text, max_chars=20000): # Internal: checkpoint fetching with raw text preserved # --------------------------------------------------------------------------- + def _get_checkpoint_with_raw(commit_sha, generate=True): """Get checkpoint data for a commit, preserving raw text for subagent. @@ -428,11 +453,13 @@ def _parse_checkpoint_output(raw): while i < len(lines) and lines[i].startswith(" "): commit_match = re.match(r"\s+([a-f0-9]+)\s+(\S+)\s+(.*)", lines[i]) if commit_match: - result["commits"].append({ - "sha": commit_match.group(1), - "date": commit_match.group(2), - "message": commit_match.group(3).strip(), - }) + result["commits"].append( + { + "sha": commit_match.group(1), + "date": commit_match.group(2), + "message": commit_match.group(3).strip(), + } + ) i += 1 continue diff --git a/src/reflect/improve.py b/src/reflect/improve.py index 2afa92c..6ad34fa 100644 --- a/src/reflect/improve.py +++ b/src/reflect/improve.py @@ -4,7 +4,6 @@ needed, then outputs a structured analysis the running LLM can act on. """ -import os import re import sys from pathlib import Path @@ -21,32 +20,40 @@ def analyze_context_quality(context_md): for i, line in enumerate(lines): if line.startswith("## "): if in_section and i > 0 and lines[i - 1].startswith("## "): - issues.append({ - "type": "empty_section", - "line": i + 1, - "detail": f"Empty section: {in_section}", - "fix_hint": "Section has no evidence — remove it from format.yaml or investigate source", - }) + issues.append( + { + "type": "empty_section", + "line": i + 1, + "detail": f"Empty section: {in_section}", + "fix_hint": "Section has no evidence — remove it from format.yaml or investigate source", + } + ) in_section = line[3:].strip() continue # Detect truncation artifacts if line.startswith("- ") and line.rstrip().endswith("..."): - issues.append({ - "type": "truncation", - "line": i + 1, - "detail": f"Truncated text in {in_section or 'unknown'} section", - "fix_hint": "Subagent should summarize, not truncate — check system prompt", - }) + issues.append( + { + "type": "truncation", + "line": i + 1, + "detail": f"Truncated text in {in_section or 'unknown'} section", + "fix_hint": "Subagent should summarize, not truncate — check system prompt", + } + ) # Detect missing citations - if line.startswith("- ") and not re.search(r'\((?:checkpoint|commit|file|session)\s+\S+\)', line): - issues.append({ - "type": "missing_citation", - "line": i + 1, - "detail": f"Bullet without reference in {in_section or 'unknown'}", - "fix_hint": "Set citations: required in format.yaml", - }) + if line.startswith("- ") and not re.search( + r"\((?:checkpoint|commit|file|session)\s+\S+\)", line + ): + issues.append( + { + "type": "missing_citation", + "line": i + 1, + "detail": f"Bullet without reference in {in_section or 'unknown'}", + "fix_hint": "Set citations: required in format.yaml", + } + ) return issues @@ -62,22 +69,26 @@ def analyze_evidence_gaps(evidence, context_md): # Friction that wasn't surfaced for f in cp.get("friction", []): if f[:40] not in context_md: - gaps.append({ - "checkpoint": cp_id, - "intent": intent, - "type": "friction_missed", - "detail": f[:120], - }) + gaps.append( + { + "checkpoint": cp_id, + "intent": intent, + "type": "friction_missed", + "detail": f[:120], + } + ) # Open items not in context for item in cp.get("open_items", []): if item[:40] not in context_md: - gaps.append({ - "checkpoint": cp_id, - "intent": intent, - "type": "open_item_missed", - "detail": item[:120], - }) + gaps.append( + { + "checkpoint": cp_id, + "intent": intent, + "type": "open_item_missed", + "detail": item[:120], + } + ) return gaps @@ -126,7 +137,9 @@ def cmd_improve(args): sections.append("## Evidence Gaps (signals not in context)") if gaps: for gap in gaps[:15]: - sections.append(f"- **{gap['type']}** (checkpoint {gap['checkpoint']}): {gap['detail']}") + sections.append( + f"- **{gap['type']}** (checkpoint {gap['checkpoint']}): {gap['detail']}" + ) else: sections.append("- No obvious gaps detected") sections.append("") @@ -146,9 +159,15 @@ def cmd_improve(args): sections.append("## Suggested Actions") sections.append("") sections.append("Based on the analysis above, consider:") - sections.append("1. **Edit .reflect/format.yaml** — add/remove/rename sections to match what your project needs") - sections.append("2. **Adjust max_bullets** — increase for sections with evidence gaps, decrease for noisy ones") - sections.append("3. **Add project-specific sections** — e.g., 'API Contracts', 'Performance Gotchas', 'Migration Notes'") + sections.append( + "1. **Edit .reflect/format.yaml** — add/remove/rename sections to match what your project needs" + ) + sections.append( + "2. **Adjust max_bullets** — increase for sections with evidence gaps, decrease for noisy ones" + ) + sections.append( + "3. **Add project-specific sections** — e.g., 'API Contracts', 'Performance Gotchas', 'Migration Notes'" + ) sections.append("4. **Re-run `reflect context`** after changes to verify improvement") print("\n".join(sections)) diff --git a/src/reflect/ingest.py b/src/reflect/ingest.py index 4f19f7f..e1bde25 100644 --- a/src/reflect/ingest.py +++ b/src/reflect/ingest.py @@ -16,19 +16,18 @@ from datetime import datetime from pathlib import Path -from .evidence import gather_evidence, build_evidence_document, truncate_evidence from .context import load_format +from .evidence import build_evidence_document, gather_evidence, truncate_evidence from .wiki import ( - slugify, + append_log, build_index_summary, - read_page, - write_page, parse_frontmatter, - append_log, + read_page, + slugify, update_index_md, + write_page, ) - # --------------------------------------------------------------------------- # Model / budget config # --------------------------------------------------------------------------- @@ -41,6 +40,7 @@ # Freshness state (duplicated from context.py to avoid circular imports) # --------------------------------------------------------------------------- + def _write_last_run(reflect_dir, checkpoint_id, git_sha): last_run = reflect_dir / ".last_run" state = { @@ -55,6 +55,7 @@ def _write_last_run(reflect_dir, checkpoint_id, git_sha): # qmd helpers # --------------------------------------------------------------------------- + def _qmd_collection_name(): """Derive a unique qmd collection name from the repo directory name.""" return f"reflect-{Path.cwd().name}" @@ -64,12 +65,15 @@ def _qmd_collection_name(): # Branch helpers (Strategy A: wiki belongs on the default branch) # --------------------------------------------------------------------------- + def _get_current_branch(): """Return the current git branch name, or None if not in a git repo.""" try: result = subprocess.run( ["git", "branch", "--show-current"], - capture_output=True, text=True, timeout=5, + capture_output=True, + text=True, + timeout=5, ) if result.returncode == 0: return result.stdout.strip() or None @@ -88,7 +92,9 @@ def _get_default_branch(): try: result = subprocess.run( ["git", "symbolic-ref", "refs/remotes/origin/HEAD"], - capture_output=True, text=True, timeout=5, + capture_output=True, + text=True, + timeout=5, ) if result.returncode == 0 and result.stdout.strip(): # e.g. "refs/remotes/origin/main" → "main" @@ -101,7 +107,9 @@ def _get_default_branch(): try: result = subprocess.run( ["git", "rev-parse", "--verify", branch], - capture_output=True, text=True, timeout=5, + capture_output=True, + text=True, + timeout=5, ) if result.returncode == 0: return branch @@ -124,7 +132,10 @@ def _qmd_reindex(verbose=False): try: subprocess.run( ["qmd", "update", "-c", collection], - capture_output=True, text=True, timeout=60, check=False, + capture_output=True, + text=True, + timeout=60, + check=False, ) except (subprocess.TimeoutExpired, FileNotFoundError) as e: print(f" [ingest] qmd update failed: {e}", file=sys.stderr) @@ -136,7 +147,8 @@ def _qmd_reindex(verbose=False): try: result = subprocess.run( ["qmd", "embed", "-c", collection], - stdout=sys.stderr, stderr=sys.stderr, + stdout=sys.stderr, + stderr=sys.stderr, timeout=900, # 15 min — generous for CPU embedding check=False, ) @@ -151,8 +163,8 @@ def _qmd_reindex(verbose=False): ) except subprocess.TimeoutExpired: print( - f" [ingest] qmd embed timed out after 15 minutes. " - f"If you're on a headless machine, try: QMD_LLAMA_GPU=false reflect ingest", + " [ingest] qmd embed timed out after 15 minutes. " + "If you're on a headless machine, try: QMD_LLAMA_GPU=false reflect ingest", file=sys.stderr, ) except FileNotFoundError as e: @@ -163,6 +175,7 @@ def _qmd_reindex(verbose=False): # Subagent helpers # --------------------------------------------------------------------------- + def _strip_fences(text): """Strip markdown code fences if the model wrapped output in them.""" stripped = text.strip() @@ -188,15 +201,23 @@ def _call_subagent(prompt, system_prompt, verbose=False, step_name=""): return None cmd = [ - "claude", "-p", - "--model", MODEL, - "--output-format", "json", - "--max-turns", "1", - "--tools", "", - "--max-budget-usd", INGEST_BUDGET, - "--setting-sources", "", + "claude", + "-p", + "--model", + MODEL, + "--output-format", + "json", + "--max-turns", + "1", + "--tools", + "", + "--max-budget-usd", + INGEST_BUDGET, + "--setting-sources", + "", "--no-session-persistence", - "--system-prompt", system_prompt, + "--system-prompt", + system_prompt, ] label = f"[ingest/{step_name}]" if step_name else "[ingest]" @@ -205,7 +226,11 @@ def _call_subagent(prompt, system_prompt, verbose=False, step_name=""): try: result = subprocess.run( - cmd, input=prompt, capture_output=True, text=True, timeout=180, + cmd, + input=prompt, + capture_output=True, + text=True, + timeout=180, ) except subprocess.TimeoutExpired: print(f" {label} timed out", file=sys.stderr) @@ -319,8 +344,7 @@ def _triage(evidence_doc, index_summary, categories, verbose=False): # Validate create items have required fields plan["create"] = [ - c for c in plan["create"] - if c.get("category") and c.get("slug") and c.get("title") + c for c in plan["create"] if c.get("category") and c.get("slug") and c.get("title") ] # Validate update/resolve items have path @@ -348,7 +372,10 @@ def _validate_triage(plan, categories, wiki_dir, verbose=False): for item in plan[key]: if not (wiki_dir / item["path"]).exists(): if verbose: - print(f" [ingest/triage] rejected {key}: path not found '{item['path']}'", file=sys.stderr) + print( + f" [ingest/triage] rejected {key}: path not found '{item['path']}'", + file=sys.stderr, + ) continue filtered.append(item) plan[key] = filtered @@ -388,7 +415,9 @@ def _validate_triage(plan, categories, wiki_dir, verbose=False): OUTPUT: Return ONLY the raw page content (frontmatter + body). No commentary. No fences.""" -def _write_page_content(evidence_doc, action_type, page_info, existing_content, today, verbose=False): +def _write_page_content( + evidence_doc, action_type, page_info, existing_content, today, verbose=False +): """Step 2 (per-page): ask the subagent to write or update a page. action_type: "create" | "update" | "resolve" @@ -424,10 +453,7 @@ def _write_page_content(evidence_doc, action_type, page_info, existing_content, f"--- EXISTING PAGE ---\n{existing_block}\n--- END EXISTING PAGE ---\n" ) - prompt = ( - f"{context_block}\n\n" - f"Evidence to draw from:\n\n{evidence_doc}" - ) + prompt = f"{context_block}\n\nEvidence to draw from:\n\n{evidence_doc}" return _call_subagent(prompt, _WRITE_SYSTEM, verbose=verbose, step_name="write") @@ -476,8 +502,12 @@ def _write_one(item): def _call_one(prep): item, action_type_eff, existing = prep raw = _write_page_content( - evidence_doc, action_type_eff, - item, existing, today, verbose=verbose, + evidence_doc, + action_type_eff, + item, + existing, + today, + verbose=verbose, ) return item, raw, action_type_eff @@ -489,7 +519,9 @@ def _call_one(prep): results.append((item, raw, action_type_eff)) else: label = item.get("path") or f"{item.get('category')}/{item.get('slug')}" - print(f" [ingest/write] skipped {label} (subagent returned nothing)", file=sys.stderr) + print( + f" [ingest/write] skipped {label} (subagent returned nothing)", file=sys.stderr + ) return results @@ -498,6 +530,7 @@ def _call_one(prep): # Page path resolution # --------------------------------------------------------------------------- + def _resolve_page_path(wiki_dir, action_type, item): """Compute the filesystem path for a page from a triage action dict. @@ -518,8 +551,10 @@ def _resolve_page_path(wiki_dir, action_type, item): try: candidate.relative_to(wiki_dir) - except ValueError: - raise ValueError(f"Path traversal rejected: {item.get('path', item.get('slug', ''))}") + except ValueError as err: + raise ValueError( + f"Path traversal rejected: {item.get('path', item.get('slug', ''))}" + ) from err return candidate @@ -528,6 +563,7 @@ def _resolve_page_path(wiki_dir, action_type, item): # Parse subagent page output into (fm, body) # --------------------------------------------------------------------------- + def _parse_page_output(raw, action_type, item, today): """Parse raw subagent output into (frontmatter_dict, body_str). @@ -563,6 +599,7 @@ def _parse_page_output(raw, action_type, item, today): # Main command # --------------------------------------------------------------------------- + def cmd_ingest(args): """Ingest new evidence into the wiki.""" reflect_dir = Path(".reflect") @@ -572,7 +609,10 @@ def cmd_ingest(args): dry_run = getattr(args, "dry_run", False) if dry_run: - print("(dry-run) reflect ingest — triage will run but no pages will be written.", file=sys.stderr) + print( + "(dry-run) reflect ingest — triage will run but no pages will be written.", + file=sys.stderr, + ) # Guard: .reflect/ must exist if not reflect_dir.exists(): @@ -606,7 +646,7 @@ def cmd_ingest(args): file=sys.stderr, ) print( - f" Wiki updates here will not appear on other branches until merged.", + " Wiki updates here will not appear on other branches until merged.", file=sys.stderr, ) print( @@ -618,7 +658,7 @@ def cmd_ingest(args): file=sys.stderr, ) print( - f" Use --force to suppress this warning.", + " Use --force to suppress this warning.", file=sys.stderr, ) print(file=sys.stderr) @@ -704,7 +744,9 @@ def cmd_ingest(args): if total_ops == 0: print("Nothing to do — wiki is already up to date.") if not dry_run: - _write_last_run(reflect_dir, evidence["latest_checkpoint_id"], evidence["latest_git_sha"]) + _write_last_run( + reflect_dir, evidence["latest_checkpoint_id"], evidence["latest_git_sha"] + ) return 0 if dry_run: @@ -720,7 +762,7 @@ def cmd_ingest(args): print("Step 2/2: Writing wiki pages...", file=sys.stderr) wiki_dir_abs = wiki_dir.resolve() - written = [] # list of (rel_path, action_type) for log + written = [] # list of (rel_path, action_type) for log errors = [] for action_type in ("create", "update", "resolve"): @@ -751,7 +793,9 @@ def cmd_ingest(args): write_page(page_path, fm, body) rel = str(page_path.relative_to(wiki_dir_abs)) written.append((rel, action_type)) - verb = {"create": "created", "update": "updated", "resolve": "resolved"}[action_type] + verb = {"create": "created", "update": "updated", "resolve": "resolved"}[ + action_type + ] print(f" {verb}: {rel}", file=sys.stderr) except Exception as e: label = str(page_path) @@ -760,9 +804,11 @@ def cmd_ingest(args): # --- Update log.md --- if written: - summary_line = f"{len(written)} page(s) — {n_create} created, {n_update} updated, {n_resolve} resolved" + summary_line = ( + f"{len(written)} page(s) — {n_create} created, {n_update} updated, {n_resolve} resolved" + ) detail_lines = [f"{verb} {rel}" for rel, verb in written] - append_log(wiki_dir, [summary_line] + detail_lines) + append_log(wiki_dir, [summary_line, *detail_lines]) # --- Update index.md --- if written: diff --git a/src/reflect/init.py b/src/reflect/init.py index 919c125..3d20620 100644 --- a/src/reflect/init.py +++ b/src/reflect/init.py @@ -1,12 +1,10 @@ """reflect init — one-stop setup: install deps, create .reflect/, wire qmd.""" -import os import shutil import subprocess import sys from pathlib import Path - ENTIRE_INSTALL_URL = "https://entire.io/install.sh" QMD_NPM_PACKAGE = "@tobilu/qmd" @@ -40,14 +38,14 @@ def _install_qmd(): # Try npm first if shutil.which("npm"): - ok, out = _run(["npm", "install", "-g", QMD_NPM_PACKAGE], timeout=120) + ok, _out = _run(["npm", "install", "-g", QMD_NPM_PACKAGE], timeout=120) if ok and shutil.which("qmd"): print("qmd installed via npm.") return True # Try bun if shutil.which("bun"): - ok, out = _run(["bun", "install", "-g", QMD_NPM_PACKAGE], timeout=120) + ok, _out = _run(["bun", "install", "-g", QMD_NPM_PACKAGE], timeout=120) if ok and shutil.which("qmd"): print("qmd installed via bun.") return True @@ -69,7 +67,9 @@ def _install_entire(): # Official install: curl -fsSL https://entire.io/install | sh result = subprocess.run( ["sh", "-c", f"curl -fsSL {ENTIRE_INSTALL_URL} | bash"], - capture_output=True, text=True, timeout=120, + capture_output=True, + text=True, + timeout=120, ) if result.returncode == 0: print("Entire CLI installed.") @@ -162,8 +162,12 @@ def cmd_init(args): if not already_initialized: if dry_run: print(f"(dry-run) would create directory {reflect_dir}/") - print(f"(dry-run) would copy {_template_path('format.yaml')} → {reflect_dir / 'format.yaml'}") - print(f"(dry-run) would copy {_template_path('config.yaml')} → {reflect_dir / 'config.yaml'}") + print( + f"(dry-run) would copy {_template_path('format.yaml')} → {reflect_dir / 'format.yaml'}" + ) + print( + f"(dry-run) would copy {_template_path('config.yaml')} → {reflect_dir / 'config.yaml'}" + ) else: reflect_dir.mkdir(exist_ok=True) @@ -178,21 +182,26 @@ def cmd_init(args): shutil.copy2(_template_path("config.yaml"), config) # --- Step 2b: Wiki (always, unless --no-wiki) --- - no_wiki = hasattr(args, 'no_wiki') and args.no_wiki + no_wiki = hasattr(args, "no_wiki") and args.no_wiki wiki = not no_wiki wiki_dir = None if wiki: if dry_run: - print(f"(dry-run) would initialize wiki at {reflect_dir / 'wiki'}/ with default category dirs") + print( + f"(dry-run) would initialize wiki at {reflect_dir / 'wiki'}/ with default category dirs" + ) else: from .wiki import init_wiki + fmt = None format_file = reflect_dir / "format.yaml" if format_file.exists(): from .context import load_format + fmt = load_format(reflect_dir) else: from .context import DEFAULT_FORMAT + fmt = DEFAULT_FORMAT wiki_dir = init_wiki(reflect_dir, fmt["sections"]) print(f"Wiki initialized: {wiki_dir}/") @@ -203,8 +212,15 @@ def cmd_init(args): collection_name = _qmd_collection_name() ok, _ = _run(["qmd", "collection", "add", wiki_path, "--name", collection_name]) if ok: - _run(["qmd", "context", "add", f"qmd://{collection_name}", - "Project knowledge base: decisions, patterns, preferences, gotchas, and all knowledge accumulated from coding sessions"]) + _run( + [ + "qmd", + "context", + "add", + f"qmd://{collection_name}", + "Project knowledge base: decisions, patterns, preferences, gotchas, and all knowledge accumulated from coding sessions", + ] + ) print(f"qmd collection registered: {collection_name}") else: print(f"qmd: collection {collection_name} already registered") @@ -212,7 +228,8 @@ def cmd_init(args): # Seed embeddings if pages already exist (e.g., re-init on existing wiki) has_pages = any( f.is_file() and f.suffix == ".md" and f.name not in ("index.md", "log.md") - for d in wiki_dir.iterdir() if d.is_dir() and not d.name.startswith("_") + for d in wiki_dir.iterdir() + if d.is_dir() and not d.name.startswith("_") for f in d.iterdir() ) if has_pages: @@ -225,7 +242,9 @@ def cmd_init(args): if ok: print("qmd skill installed: .claude/skills/qmd/") elif wiki and dry_run: - print(f"(dry-run) would register qmd collection {_qmd_collection_name()} and seed embeddings") + print( + f"(dry-run) would register qmd collection {_qmd_collection_name()} and seed embeddings" + ) print("(dry-run) would install qmd skill: .claude/skills/qmd/") # --- Step 3: Install skill + hooks --- diff --git a/src/reflect/lint.py b/src/reflect/lint.py index 5d163eb..bf17031 100644 --- a/src/reflect/lint.py +++ b/src/reflect/lint.py @@ -20,20 +20,20 @@ from datetime import datetime, timedelta from pathlib import Path -from .wiki import scan_wiki_index, slugify, read_page, write_page from .context import load_format from .sources import has_git, run - +from .wiki import read_page, scan_wiki_index, slugify, write_page # --------------------------------------------------------------------------- # Helpers # --------------------------------------------------------------------------- + def _parse_recency(recency_str): """Parse a recency string like '30d', '14d', '90d' into a timedelta.""" if not recency_str: return timedelta(days=30) - match = re.match(r'(\d+)d', str(recency_str)) + match = re.match(r"(\d+)d", str(recency_str)) return timedelta(days=int(match.group(1))) if match else timedelta(days=30) @@ -66,14 +66,37 @@ def _title_keywords(title): Drops very short (≤2 char) and common stop words. """ STOP = { - "a", "an", "the", "and", "or", "in", "on", "of", "to", "for", - "is", "are", "was", "were", "be", "been", "with", "from", "at", - "by", "as", "it", "its", "that", "this", "not", "no", "do", "did", + "a", + "an", + "the", + "and", + "or", + "in", + "on", + "of", + "to", + "for", + "is", + "are", + "was", + "were", + "be", + "been", + "with", + "from", + "at", + "by", + "as", + "it", + "its", + "that", + "this", + "not", + "no", + "do", + "did", } - words = [ - w for w in re.split(r"[^a-z0-9]+", title.lower()) - if len(w) > 2 and w not in STOP - ] + words = [w for w in re.split(r"[^a-z0-9]+", title.lower()) if len(w) > 2 and w not in STOP] return words @@ -81,6 +104,7 @@ def _title_keywords(title): # Individual checks # --------------------------------------------------------------------------- + def _check_stale(pages, fmt): """Return issues for pages whose updated date exceeds category recency window.""" issues = [] @@ -98,19 +122,23 @@ def _check_stale(pages, fmt): updated = _parse_date(page.get("updated", "")) if updated is None: # No updated date — treat as potentially stale with a note - issues.append({ - "type": "stale", - "path": page["rel_path"], - "detail": f"No updated date (recency window: {recency.days}d)", - }) + issues.append( + { + "type": "stale", + "path": page["rel_path"], + "detail": f"No updated date (recency window: {recency.days}d)", + } + ) continue age = today - updated if age > recency: - issues.append({ - "type": "stale", - "path": page["rel_path"], - "detail": f"Updated {updated} ({age.days}d ago, recency window: {recency.days}d)", - }) + issues.append( + { + "type": "stale", + "path": page["rel_path"], + "detail": f"Updated {updated} ({age.days}d ago, recency window: {recency.days}d)", + } + ) return issues @@ -118,9 +146,6 @@ def _check_orphans(pages): """Return issues for pages with no inbound related links from other pages.""" issues = [] - # Collect all rel_paths and all outbound related links - all_rel_paths = {p["rel_path"] for p in pages} - # Build set of pages that are referenced by at least one other page referenced = set() for page in pages: @@ -140,11 +165,13 @@ def _check_orphans(pages): rel = page["rel_path"] rel_no_ext = rel[:-3] if rel.endswith(".md") else rel if rel not in referenced and rel_no_ext not in referenced: - issues.append({ - "type": "orphan", - "path": rel, - "detail": "No inbound related links from other pages", - }) + issues.append( + { + "type": "orphan", + "path": rel, + "detail": "No inbound related links from other pages", + } + ) return issues @@ -155,10 +182,14 @@ def _check_possibly_resolved(pages): return issues # Fetch last 50 commits' short SHAs + messages - git_log = run([ - "git", "log", "-50", - "--format=%h %s", - ]) + git_log = run( + [ + "git", + "log", + "-50", + "--format=%h %s", + ] + ) if not git_log: return issues @@ -192,12 +223,14 @@ def _check_possibly_resolved(pages): if matching_shas: sha_list = ", ".join(matching_shas[:5]) suffix = f" (+{len(matching_shas) - 5} more)" if len(matching_shas) > 5 else "" - issues.append({ - "type": "possibly-resolved", - "path": page["rel_path"], - "detail": f"Keywords found in recent commits: {sha_list}{suffix}", - "_matching_shas": matching_shas, # kept for --fix use - }) + issues.append( + { + "type": "possibly-resolved", + "path": page["rel_path"], + "detail": f"Keywords found in recent commits: {sha_list}{suffix}", + "_matching_shas": matching_shas, # kept for --fix use + } + ) return issues @@ -214,11 +247,13 @@ def _check_coverage_gaps(pages, fmt): slug = slugify(section.get("name", "")) count = counts.get(slug, 0) if count < 2: - issues.append({ - "type": "coverage-gap", - "category": slug, - "detail": f"Only {count} page{'s' if count != 1 else ''} (min recommended: 2)", - }) + issues.append( + { + "type": "coverage-gap", + "category": slug, + "detail": f"Only {count} page{'s' if count != 1 else ''} (min recommended: 2)", + } + ) return issues @@ -233,7 +268,7 @@ def _check_near_duplicates(pages): cat = page["category"] by_cat.setdefault(cat, []).append(page) - for cat, cat_pages in by_cat.items(): + for _cat, cat_pages in by_cat.items(): n = len(cat_pages) for i in range(n): for j in range(i + 1, n): @@ -241,11 +276,13 @@ def _check_near_duplicates(pages): b = cat_pages[j] score = _title_similarity(a["title"], b["title"]) if score > THRESHOLD: - issues.append({ - "type": "near-duplicate", - "paths": [a["rel_path"], b["rel_path"]], - "detail": f"{int(score * 100)}% title overlap", - }) + issues.append( + { + "type": "near-duplicate", + "paths": [a["rel_path"], b["rel_path"]], + "detail": f"{int(score * 100)}% title overlap", + } + ) return issues @@ -253,6 +290,7 @@ def _check_near_duplicates(pages): # --fix actions # --------------------------------------------------------------------------- + def _fix_resolved_pages(possibly_resolved_issues, wiki_dir): """Mark possibly-resolved open-work pages as status: resolved.""" fixed = [] @@ -304,6 +342,7 @@ def _fix_archive_superseded(pages, wiki_dir): # Output formatting # --------------------------------------------------------------------------- + def _print_report(issues, fix_log): """Print human-readable wiki health report.""" stale = [i for i in issues if i["type"] == "stale"] @@ -385,6 +424,7 @@ def _issues_for_json(issues): # CLI entry point # --------------------------------------------------------------------------- + def cmd_lint(args): """Check wiki health and report issues.""" as_json = getattr(args, "json", False) diff --git a/src/reflect/metrics.py b/src/reflect/metrics.py index 2a10311..bdc464c 100644 --- a/src/reflect/metrics.py +++ b/src/reflect/metrics.py @@ -1,11 +1,11 @@ """reflect metrics — JSON metrics and shields.io endpoint export.""" import json -import os import sys from pathlib import Path from .aggregates import token_window_stats +from .evidence import gather_evidence from .sources import ( get_entire_checkpoints, get_entire_sessions, @@ -13,7 +13,6 @@ has_git, run, ) -from .evidence import gather_evidence def _count_items(evidence, field): @@ -157,7 +156,9 @@ def cmd_metrics(args): return 1 if getattr(args, "no_json", False) and not getattr(args, "export_dir", None): - print("Use --export DIR with --no-json, or omit --no-json for stdout JSON.", file=sys.stderr) + print( + "Use --export DIR with --no-json, or omit --no-json for stdout JSON.", file=sys.stderr + ) return 1 data, err = collect_metrics(generate_summaries=args.generate_summaries) diff --git a/src/reflect/search.py b/src/reflect/search.py index 01efeb9..e81cba5 100644 --- a/src/reflect/search.py +++ b/src/reflect/search.py @@ -6,8 +6,8 @@ import sys from pathlib import Path -from .sources import has_entire, has_git, get_entire_checkpoints, run -from .wiki import scan_wiki_index, read_page +from .sources import get_entire_checkpoints, has_entire, has_git, run +from .wiki import read_page, scan_wiki_index def _search_tokens(query, phrase): @@ -40,10 +40,14 @@ def _qmd_collection_name(): def _search_qmd(query, limit): """Search wiki via qmd hybrid search (BM25 + vector + reranking).""" cmd = [ - "qmd", "query", query, - "-c", _qmd_collection_name(), + "qmd", + "query", + query, + "-c", + _qmd_collection_name(), "--json", - "-n", str(limit), + "-n", + str(limit), ] raw = run(cmd, timeout=60) if not raw: @@ -79,14 +83,16 @@ def _search_wiki_text(tokens, wiki_dir, limit): score = 0 if score > 0: - matches.append({ - "rel_path": page["rel_path"], - "title": page["title"], - "summary": page["summary"], - "category": page["category"], - "tags": page["tags"], - "match_score": score, - }) + matches.append( + { + "rel_path": page["rel_path"], + "title": page["title"], + "summary": page["summary"], + "category": page["category"], + "tags": page["tags"], + "match_score": score, + } + ) matches.sort(key=lambda m: m["match_score"], reverse=True) return matches[:limit] @@ -160,14 +166,16 @@ def cmd_search(args): normalized_wiki.append(m) else: # qmd shape → normalize - normalized_wiki.append({ - "rel_path": m.get("path", ""), - "title": "", - "summary": m.get("snippet", ""), - "category": "", - "tags": [], - "match_score": m.get("score", 0), - }) + normalized_wiki.append( + { + "rel_path": m.get("path", ""), + "title": "", + "summary": m.get("snippet", ""), + "category": "", + "tags": [], + "match_score": m.get("score", 0), + } + ) result = { "query": query, @@ -197,7 +205,9 @@ def cmd_search(args): # text result shape: {"rel_path": ..., "title": ..., "summary": ..., "tags": ...} if "rel_path" in m: tags = m.get("tags", []) - tags_str = (", ".join(tags) if isinstance(tags, list) else str(tags)) if tags else "" + tags_str = ( + (", ".join(tags) if isinstance(tags, list) else str(tags)) if tags else "" + ) summary = m.get("summary", "") print(f"- [{m['rel_path']}] {summary}") if tags_str: @@ -237,8 +247,7 @@ def cmd_search(args): print(f"No matches for {tokens[0]!r}.") else: print( - f"No matches (OR across {len(tokens)} terms: " - f"{', '.join(repr(t) for t in tokens)})." + f"No matches (OR across {len(tokens)} terms: {', '.join(repr(t) for t in tokens)})." ) return 0 diff --git a/src/reflect/sessions.py b/src/reflect/sessions.py index 598f989..0784a66 100644 --- a/src/reflect/sessions.py +++ b/src/reflect/sessions.py @@ -5,7 +5,7 @@ from datetime import datetime from .fmt import format_duration, format_tokens, short_id -from .sources import has_entire, get_entire_sessions, get_session_info +from .sources import get_entire_sessions, get_session_info, has_entire def _cache_hit_pct(tokens): @@ -82,9 +82,11 @@ def _show_list(limit, as_json=False): status_icon = "*" if r["status"] == "active" else "-" sid = short_id(r["session_id"]) prompt = r["prompt"][:60] - print(f"{status_icon} [{sid}] {r['date']} {r['agent']} [{r['status']}] \"{prompt}\"") - print(f" Tokens: {format_tokens(r['tokens']['total'])} (cache: {r['tokens']['cache_hit_pct']}%) " - f"Duration: {r['duration']} Turns: {r['turns']} Files: {len(r['files_touched'])}") + print(f'{status_icon} [{sid}] {r["date"]} {r["agent"]} [{r["status"]}] "{prompt}"') + print( + f" Tokens: {format_tokens(r['tokens']['total'])} (cache: {r['tokens']['cache_hit_pct']}%) " + f"Duration: {r['duration']} Turns: {r['turns']} Files: {len(r['files_touched'])}" + ) print() return 0 @@ -149,7 +151,9 @@ def _show_detail(session_id, as_json=False): def cmd_sessions(args): """List or inspect sessions tracked by Entire CLI.""" if not has_entire(): - print("reflect sessions requires Entire CLI. Install from https://entire.dev", file=sys.stderr) + print( + "reflect sessions requires Entire CLI. Install from https://entire.dev", file=sys.stderr + ) return 1 session_id = getattr(args, "session_id", None) diff --git a/src/reflect/sources.py b/src/reflect/sources.py index 48514f6..1439d1c 100644 --- a/src/reflect/sources.py +++ b/src/reflect/sources.py @@ -6,7 +6,6 @@ import shlex import shutil import subprocess -from pathlib import Path def run(cmd, timeout=30): @@ -17,9 +16,7 @@ def run(cmd, timeout=30): if isinstance(cmd, str): cmd = shlex.split(cmd) try: - result = subprocess.run( - cmd, capture_output=True, text=True, timeout=timeout - ) + result = subprocess.run(cmd, capture_output=True, text=True, timeout=timeout) return result.stdout.strip() if result.returncode == 0 else "" except (subprocess.TimeoutExpired, FileNotFoundError): return "" @@ -63,12 +60,14 @@ def get_entire_checkpoints(): commits.append({"sha": sha, "message": msg}) dates.append(date_str) i += 1 - checkpoints.append({ - "id": cp_id, - "intent": intent[:200], - "date": dates[0] if dates else "", - "commits": commits, - }) + checkpoints.append( + { + "id": cp_id, + "intent": intent[:200], + "date": dates[0] if dates else "", + "commits": commits, + } + ) else: i += 1 return checkpoints @@ -97,9 +96,7 @@ def get_entire_sessions(): while i < len(lines): line = lines[i] # Match: "Claude Code · project · session " - match = re.match( - r'^(.+?)\s+·\s+(.+?)\s+·\s+session\s+([a-f0-9-]+)', line - ) + match = re.match(r"^(.+?)\s+·\s+(.+?)\s+·\s+session\s+([a-f0-9-]+)", line) if match: agent = match.group(1).strip() project = match.group(2).strip() @@ -107,7 +104,7 @@ def get_entire_sessions(): prompt_snippet = "" status_line = "" # Next line: > "prompt..." - if i + 1 < len(lines) and lines[i + 1].strip().startswith('>'): + if i + 1 < len(lines) and lines[i + 1].strip().startswith(">"): prompt_snippet = lines[i + 1].strip().lstrip('> "').rstrip('"') i += 1 # Next line: status info @@ -115,14 +112,16 @@ def get_entire_sessions(): status_line = lines[i + 1].strip() i += 1 status = "active" if "active" in status_line.split("·")[0] else "ended" - sessions.append({ - "session_id": session_id, - "agent": agent, - "project": project, - "status": status, - "status_line": status_line, - "prompt_snippet": prompt_snippet, - }) + sessions.append( + { + "session_id": session_id, + "agent": agent, + "project": project, + "status": status, + "status_line": status_line, + "prompt_snippet": prompt_snippet, + } + ) i += 1 return sessions @@ -165,7 +164,6 @@ def get_checkpoint_for_commit(sha): # Parse the output: first line has "Checkpoint: " cp_id = None intent = "" - commits = [] for line in raw.split("\n"): if line.startswith("Checkpoint:"): cp_id = line.split(":", 1)[1].strip() diff --git a/src/reflect/status.py b/src/reflect/status.py index 871e7e8..ba27447 100644 --- a/src/reflect/status.py +++ b/src/reflect/status.py @@ -33,6 +33,7 @@ def _collect_status(): entire_raw = run(["entire", "status", "--no-pager"]) entire_status = entire_raw.split("\n")[0].strip() if entire_raw else "" from .sources import get_entire_checkpoints + checkpoint_count = len(get_entire_checkpoints()) data["entire"] = { "available": True, @@ -148,7 +149,9 @@ def cmd_status(args): lr = data.get("last_run") if lr: - print(f"**Last run**: checkpoint={lr.get('last_checkpoint', 'none')}, git={lr.get('last_git_sha', 'none')}") + print( + f"**Last run**: checkpoint={lr.get('last_checkpoint', 'none')}, git={lr.get('last_git_sha', 'none')}" + ) stats = data.get("token_usage") if stats: @@ -177,7 +180,7 @@ def _show_token_analytics(stats): cache_pct = stats["cache_hit_pct"] avg_tokens = stats["avg_tokens_per_session"] - print(f"\n## Token Usage (last 7 days)\n") + print("\n## Token Usage (last 7 days)\n") print(f" Sessions: {session_count}") print(f" Total: {format_tokens(total_tokens)} tokens") print(f" Cache hit rate: {cache_pct}%") @@ -185,6 +188,6 @@ def _show_token_analytics(stats): hot = stats.get("hot_areas", []) if hot: - print(f"\n## Hot Areas (cross-session)\n") + print("\n## Hot Areas (cross-session)\n") for h in hot: print(f" {h['path']} — {h['count']} of {session_count} sessions") diff --git a/src/reflect/timeline.py b/src/reflect/timeline.py index 16ef102..5c9c975 100644 --- a/src/reflect/timeline.py +++ b/src/reflect/timeline.py @@ -5,14 +5,16 @@ from collections import defaultdict from datetime import datetime, timedelta -from .fmt import format_duration, format_tokens, format_time, short_id -from .sources import has_entire, get_entire_sessions, get_session_info, get_rewind_points +from .fmt import format_duration, format_time, format_tokens, short_id +from .sources import get_entire_sessions, get_rewind_points, get_session_info, has_entire def cmd_timeline(args): """Show date-grouped timeline of sessions and checkpoints.""" if not has_entire(): - print("reflect timeline requires Entire CLI. Install from https://entire.dev", file=sys.stderr) + print( + "reflect timeline requires Entire CLI. Install from https://entire.dev", file=sys.stderr + ) return 1 days = getattr(args, "days", 7) @@ -89,9 +91,8 @@ def cmd_timeline(args): prompt = e.get("prompt", "")[:55] sid = short_id(e["session_id"]) - print(f" [{sid}] {start_time}{end_time} {e['agent']} \"{prompt}\"") - print(f" {tok_str} tokens · {duration} · " - f"{e['turns']} turns · {len(files)} files") + print(f' [{sid}] {start_time}{end_time} {e["agent"]} "{prompt}"') + print(f" {tok_str} tokens · {duration} · {e['turns']} turns · {len(files)} files") for cp in e.get("checkpoints", []): cp_id = short_id(cp.get("id", cp.get("checkpoint_id", ""))) diff --git a/src/reflect/wiki.py b/src/reflect/wiki.py index f94a708..b51387e 100644 --- a/src/reflect/wiki.py +++ b/src/reflect/wiki.py @@ -11,7 +11,6 @@ from datetime import datetime from pathlib import Path - # --------------------------------------------------------------------------- # Slugify # --------------------------------------------------------------------------- @@ -35,7 +34,7 @@ def slugify(name): # Drop common leading adjectives for prefix in ("key ", "critical ", "important "): if low.startswith(prefix): - low = low[len(prefix):] + low = low[len(prefix) :] # Drop anything after &, —, or – for sep in (" & ", " — ", " – ", " - "): @@ -51,6 +50,7 @@ def slugify(name): # Frontmatter parsing / writing # --------------------------------------------------------------------------- + def parse_frontmatter(text): """Parse YAML frontmatter from markdown text. @@ -65,7 +65,7 @@ def parse_frontmatter(text): return {}, text raw_fm = text[4:end] # skip opening ---\n - body = text[end + 4:].lstrip("\n") # skip closing ---\n + body = text[end + 4 :].lstrip("\n") # skip closing ---\n fm = {} current_key = None @@ -155,6 +155,7 @@ def render_frontmatter(fm): # Page I/O # --------------------------------------------------------------------------- + def read_page(page_path): """Read a wiki page. Returns (frontmatter_dict, body_text).""" text = Path(page_path).read_text() @@ -173,6 +174,7 @@ def write_page(page_path, fm, body): # Wiki index (runtime scan of frontmatter) # --------------------------------------------------------------------------- + def scan_wiki_index(wiki_dir): """Scan all wiki pages and return a list of page metadata dicts. @@ -219,20 +221,22 @@ def scan_wiki_index(wiki_dir): summary = stripped[:150] break - pages.append({ - "path": str(md_file), - "rel_path": str(rel), - "category": category, - "filename": md_file.stem, - "title": title, - "status": fm.get("status", "active"), - "tags": fm.get("tags", []), - "updated": fm.get("updated", ""), - "created": fm.get("created", ""), - "sources": fm.get("sources", []), - "related": fm.get("related", []), - "summary": summary, - }) + pages.append( + { + "path": str(md_file), + "rel_path": str(rel), + "category": category, + "filename": md_file.stem, + "title": title, + "status": fm.get("status", "active"), + "tags": fm.get("tags", []), + "updated": fm.get("updated", ""), + "created": fm.get("created", ""), + "sources": fm.get("sources", []), + "related": fm.get("related", []), + "summary": summary, + } + ) return pages @@ -259,6 +263,7 @@ def build_index_summary(wiki_dir): # Wiki directory setup # --------------------------------------------------------------------------- + def init_wiki(reflect_dir, fmt_sections): """Create wiki/ directory structure from format.yaml sections. @@ -296,6 +301,7 @@ def append_log(wiki_dir, entry_lines): # index.md — committed table of contents # --------------------------------------------------------------------------- + def update_index_md(wiki_dir): """Regenerate index.md from current wiki pages. diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..2a7d0e1 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,39 @@ +"""Shared pytest fixtures for the reflect test suite.""" + +from __future__ import annotations + +import os +import subprocess +from collections.abc import Iterator +from pathlib import Path + +import pytest + + +@pytest.fixture +def tmp_repo(tmp_path: Path, monkeypatch: pytest.MonkeyPatch) -> Iterator[Path]: + """Create an empty git repo in a temp dir, chdir into it, and yield the path. + + Disables GPG signing so the seed commit succeeds in CI environments where + signing is enforced. Restores the original cwd via monkeypatch.chdir. + """ + monkeypatch.chdir(tmp_path) + subprocess.run(["git", "init", "-q"], check=True, cwd=tmp_path) + subprocess.run(["git", "config", "user.email", "test@example.com"], check=True, cwd=tmp_path) + subprocess.run(["git", "config", "user.name", "Test"], check=True, cwd=tmp_path) + subprocess.run(["git", "config", "commit.gpgsign", "false"], check=True, cwd=tmp_path) + subprocess.run( + ["git", "-c", "commit.gpgsign=false", "commit", "--allow-empty", "-m", "seed"], + check=True, + cwd=tmp_path, + ) + yield tmp_path + + +@pytest.fixture +def reflect_env(monkeypatch: pytest.MonkeyPatch) -> None: + """Reset reflect-related env vars to known values for deterministic tests.""" + for var in ("REFLECT_MODEL", "REFLECT_CONTEXT_BUDGET", "REFLECT_INGEST_BUDGET"): + monkeypatch.delenv(var, raising=False) + # Avoid accidentally hitting the user's real reflect home. + monkeypatch.setenv("REFLECT_HOME", os.devnull) diff --git a/tests/test_cli.py b/tests/test_cli.py new file mode 100644 index 0000000..d2fb9e0 --- /dev/null +++ b/tests/test_cli.py @@ -0,0 +1,94 @@ +"""End-to-end CLI tests that exercise build_parser + main() directly. + +We invoke `main(argv)` rather than spawning a subprocess so coverage is collected +and tracebacks are readable. For the few tests that exercise real subprocess +behavior (status, init), the cwd is overridden via the `tmp_repo` fixture. +""" + +from __future__ import annotations + +import json +from pathlib import Path + +import pytest + +from reflect import __version__ +from reflect.cli import build_parser, main + + +def test_version_flag(capsys: pytest.CaptureFixture[str]) -> None: + with pytest.raises(SystemExit) as excinfo: + main(["--version"]) + assert excinfo.value.code == 0 + captured = capsys.readouterr() + assert __version__ in captured.out + + +def test_help_lists_all_subcommands(capsys: pytest.CaptureFixture[str]) -> None: + with pytest.raises(SystemExit) as excinfo: + main(["--help"]) + assert excinfo.value.code == 0 + out = capsys.readouterr().out + for cmd in ( + "init", + "upgrade", + "context", + "search", + "status", + "sessions", + "timeline", + "ingest", + "lint", + "improve", + "metrics", + ): + assert cmd in out, f"missing subcommand {cmd} in --help output" + + +def test_no_args_prints_help(capsys: pytest.CaptureFixture[str]) -> None: + rc = main([]) + out = capsys.readouterr().out + assert rc == 0 + assert "usage: reflect" in out + + +def test_build_parser_returns_parser_with_subcommands() -> None: + parser = build_parser() + actions = [a for a in parser._actions if a.dest == "command"] + assert actions, "no subparsers action registered" + choices = set(actions[0].choices) + assert {"init", "ingest", "search", "lint", "status", "metrics"} <= choices + + +def test_status_outside_reflect_dir_is_user_error( + tmp_repo: Path, capsys: pytest.CaptureFixture[str] +) -> None: + rc = main(["status"]) + out = capsys.readouterr().out + capsys.readouterr().err + assert rc != 0 or "No .reflect" in out + + +def test_init_dry_run_makes_no_changes(tmp_repo: Path, capsys: pytest.CaptureFixture[str]) -> None: + rc = main(["init", "--dry-run", "--no-wiki"]) + captured = capsys.readouterr() + out = captured.out + captured.err + assert rc == 0 + assert "(dry-run)" in out + assert not (tmp_repo / ".reflect").exists() + assert not (tmp_repo / ".claude").exists() + + +def test_search_requires_query(capsys: pytest.CaptureFixture[str]) -> None: + with pytest.raises(SystemExit) as excinfo: + main(["search"]) + # argparse exits 2 when required args are missing. + assert excinfo.value.code == 2 + + +def test_metrics_outputs_json(tmp_repo: Path, capsys: pytest.CaptureFixture[str]) -> None: + # metrics without .reflect/ should still produce valid JSON or a graceful exit. + rc = main(["metrics"]) + out = capsys.readouterr().out + if rc == 0 and out.strip(): + # Validate it's parseable JSON when emitted + json.loads(out) diff --git a/tests/test_exit_codes.py b/tests/test_exit_codes.py new file mode 100644 index 0000000..e567c39 --- /dev/null +++ b/tests/test_exit_codes.py @@ -0,0 +1,17 @@ +"""Sanity tests for the exit-code module.""" + +from reflect import exit_codes + + +def test_exit_codes_are_distinct() -> None: + codes = { + exit_codes.OK, + exit_codes.USER_ERROR, + exit_codes.ENV_ERROR, + exit_codes.UPSTREAM_ERROR, + } + assert len(codes) == 4 + + +def test_ok_is_zero() -> None: + assert exit_codes.OK == 0 diff --git a/tests/test_format.py b/tests/test_format.py new file mode 100644 index 0000000..3157379 --- /dev/null +++ b/tests/test_format.py @@ -0,0 +1,75 @@ +"""Unit tests for the format.yaml loader (yaml-lite parser).""" + +from __future__ import annotations + +from pathlib import Path + +from reflect.context import DEFAULT_FORMAT, load_format + + +def test_load_format_returns_default_when_missing(tmp_path: Path) -> None: + fmt = load_format(tmp_path) + assert fmt == DEFAULT_FORMAT + # Must be a copy, not the singleton — mutation should not bleed. + fmt["sections"].clear() + assert DEFAULT_FORMAT["sections"], "DEFAULT_FORMAT was mutated" + + +def test_load_format_parses_user_overrides(tmp_path: Path) -> None: + (tmp_path / "format.yaml").write_text( + """\ +sections: + - name: My Custom Section + purpose: testing + max_bullets: 3 + recency: 7d + - name: Another One + purpose: also testing + max_bullets: 5 + recency: 14d +citations: optional +max_lines: 200 +""" + ) + fmt = load_format(tmp_path) + assert fmt["citations"] == "optional" + assert fmt["max_lines"] == 200 + names = [s["name"] for s in fmt["sections"]] + assert names == ["My Custom Section", "Another One"] + assert fmt["sections"][0]["max_bullets"] == 3 + assert fmt["sections"][0]["recency"] == "7d" + + +def test_load_format_parses_entry_fields(tmp_path: Path) -> None: + (tmp_path / "format.yaml").write_text( + """\ +sections: + - name: Pitfalls + purpose: known mistakes + max_bullets: 8 + recency: 90d + entry_fields: + - mistake + - consequence + - rule +""" + ) + fmt = load_format(tmp_path) + assert fmt["sections"][0]["entry_fields"] == ["mistake", "consequence", "rule"] + + +def test_load_format_ignores_comments(tmp_path: Path) -> None: + (tmp_path / "format.yaml").write_text( + """\ +# Top-level comment +sections: + # Another comment + - name: Foo + purpose: bar + max_bullets: 2 + recency: 30d +""" + ) + fmt = load_format(tmp_path) + assert len(fmt["sections"]) == 1 + assert fmt["sections"][0]["name"] == "Foo" diff --git a/tests/test_wiki.py b/tests/test_wiki.py new file mode 100644 index 0000000..2e32813 --- /dev/null +++ b/tests/test_wiki.py @@ -0,0 +1,59 @@ +"""Pure-Python tests for the wiki module helpers (no subprocess, no LLM).""" + +from __future__ import annotations + +from pathlib import Path + +from reflect.wiki import parse_frontmatter, read_page, slugify, write_page + + +def test_slugify_basics() -> None: + # Heuristic: drop "key"/"critical"/"important" prefix and "& X" suffix. + assert slugify("Key Decisions & Rationale") == "decisions" + assert slugify("Open Work") == "open-work" + assert slugify("Critical Pitfalls") == "pitfalls" + assert slugify("Gotchas & Friction") == "gotchas" + + +def test_slugify_strips_separators() -> None: + assert slugify("foo - bar") == "foo" + assert slugify("alpha & beta") == "alpha" + assert slugify("Hello — World") == "hello" + + +def test_slugify_empty_returns_general() -> None: + assert slugify("") == "general" + assert slugify(" ") == "general" + + +def test_parse_frontmatter_roundtrip() -> None: + raw = """--- +title: Sample Page +created: 2026-01-01 +updated: 2026-01-02 +status: active +--- + +Body text here. +""" + fm, body = parse_frontmatter(raw) + assert fm["title"] == "Sample Page" + assert fm["status"] == "active" + assert body.strip() == "Body text here." + + +def test_parse_frontmatter_no_frontmatter() -> None: + fm, body = parse_frontmatter("Just body, no frontmatter.\n") + assert fm == {} + assert "Just body" in body + + +def test_write_then_read_page(tmp_path: Path) -> None: + page = tmp_path / "decisions" / "test.md" + fm = {"title": "Test", "created": "2026-01-01", "status": "active"} + body = "## Heading\n\nContent." + write_page(page, fm, body) + assert page.exists() + out_fm, out_body = read_page(page) + assert out_fm["title"] == "Test" + assert "Content." in out_body From bc711d0b72474275a4c76c08f4f3929556564f58 Mon Sep 17 00:00:00 2001 From: Claude Date: Sat, 25 Apr 2026 04:03:52 +0000 Subject: [PATCH 6/7] Phase 5: mkdocs-material docs site with auto-generated CLI reference - mkdocs.yml at repo root: Material theme (light/dark toggle), instant navigation, code-copy, edit-on-github links, search suggestions. - docs/hooks/cli_reference.py: mkdocs hook that introspects build_parser() from src/reflect/cli.py and injects `reflect --help` plus every subcommand's --help into commands.md at build time. Mirrors agents-cli's hook pattern but auto-generates from argparse instead of SKILL frontmatter (we have both; argparse is more authoritative for flags). - docs/index.md, install.md, configuration.md, skill.md: hand-written guides covering the user-visible surface. - docs/commands.md: contains a single `{{ cli_reference }}` placeholder; the hook expands it. - docs/spec.md, docs/roadmap.md: copies of the root SPEC.md / ROADMAP.md so the docs site is self-contained. - exclude_docs filters out docs/badges (shields.io endpoints, not docs). - .gitignore: add Python build/test/lint cache dirs and mkdocs site/ output. Verified: `uv run mkdocs build --strict` succeeds; the rendered commands page contains expanded help text for all 11 subcommands. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- .gitignore | 14 ++ docs/commands.md | 6 + docs/configuration.md | 82 ++++++++++ docs/hooks/cli_reference.py | 45 ++++++ docs/index.md | 52 +++++++ docs/install.md | 70 +++++++++ docs/roadmap.md | 102 +++++++++++++ docs/skill.md | 48 ++++++ docs/spec.md | 297 ++++++++++++++++++++++++++++++++++++ mkdocs.yml | 64 ++++++++ 10 files changed, 780 insertions(+) create mode 100644 docs/commands.md create mode 100644 docs/configuration.md create mode 100644 docs/hooks/cli_reference.py create mode 100644 docs/index.md create mode 100644 docs/install.md create mode 100644 docs/roadmap.md create mode 100644 docs/skill.md create mode 100644 docs/spec.md create mode 100644 mkdocs.yml diff --git a/.gitignore b/.gitignore index dd93064..0db87df 100644 --- a/.gitignore +++ b/.gitignore @@ -7,6 +7,20 @@ __pycache__/ *.pyc bench/results/tmp-* +# Python build / dev artifacts +build/ +dist/ +*.egg-info/ +.venv/ +.mypy_cache/ +.pytest_cache/ +.ruff_cache/ +.coverage +htmlcov/ + +# mkdocs build output +site/ + # Tool-managed artifacts (installed by `reflect init` via their own tools) .agents/ .claude/skills/qmd diff --git a/docs/commands.md b/docs/commands.md new file mode 100644 index 0000000..08e6408 --- /dev/null +++ b/docs/commands.md @@ -0,0 +1,6 @@ +# Commands + +The full CLI reference below is generated from `reflect --help` at build time +(see `docs/hooks/cli_reference.py`). + +{{ cli_reference }} diff --git a/docs/configuration.md b/docs/configuration.md new file mode 100644 index 0000000..6cee04a --- /dev/null +++ b/docs/configuration.md @@ -0,0 +1,82 @@ +# Configuration + +reflect is configured at three layers, all project-scoped: + +1. **`.reflect/format.yaml`** — what categories the wiki has and how strict the + triage subagent is. +2. **`.reflect/config.yaml`** — operational settings (e.g., `session_start: auto|manual`). +3. **Environment variables** — runtime knobs (model, budget, home). + +There is **no global `~/.reflect/`**. Configuration travels with the repo. + +## `.reflect/format.yaml` + +The user-facing schema. Defines the wiki sections (categories), their recency +windows, and bullet limits. The triage subagent uses this as guidance but can +also propose new categories dynamically. + +```yaml +sections: + - name: Key Decisions & Rationale + purpose: why things are the way they are, not what they are + max_bullets: 8 + recency: 30d + + - name: Gotchas & Friction + purpose: things that burned time or surprised the agent + max_bullets: 6 + recency: 14d + + - name: Open Work + purpose: unfinished items a new session should pick up + max_bullets: 5 + recency: 7d + + - name: Critical Pitfalls + purpose: agent mistakes, reverted work, and failed approaches + max_bullets: 8 + recency: 90d + entry_fields: + - mistake # what the agent did wrong + - consequence # what broke or had to be reverted + - rule # the "don't do X because Y" directive + +citations: required +max_lines: 150 +``` + +Field reference: + +- `sections[].name` — display name (also drives the wiki subdirectory slug). +- `sections[].purpose` — guidance the LLM uses when deciding what fits. +- `sections[].max_bullets` — soft cap on entries per section in the briefing. +- `sections[].recency` — duration string (e.g. `30d`); pages older than this in + this section are flagged stale by `reflect lint`. +- `sections[].entry_fields` — optional structured-bullet schema (e.g. for pitfalls). +- `citations` — `required` forces every bullet to cite a checkpoint/commit/file. +- `max_lines` — cap on the synthesized `context.md`. + +## `.reflect/config.yaml` + +Operational knobs: + +```yaml +session_start: auto # auto = SessionStart hook prints REFLECT_WIKI_INGEST + # manual = hook only prints a hint +``` + +## Environment variables + +| Variable | Purpose | Default | +|---------------------------|--------------------------------------------------|---------------------------------| +| `REFLECT_MODEL` | Claude model for triage/write/context subagents | `claude-haiku-4-5-20251001` | +| `REFLECT_INGEST_BUDGET` | USD ceiling per `reflect ingest` invocation | `0.10` | +| `REFLECT_CONTEXT_BUDGET` | USD ceiling per `reflect context` invocation | `0.05` | +| `REFLECT_HOME` | Override the reflect data directory | unset | +| `QMD_LLAMA_GPU` | Set to `false` on headless boxes (qmd CPU only) | unset | + +## Gitignore + +`reflect init` will print a tip suggesting you add `.reflect/.last_run` to your +`.gitignore`. The rest of `.reflect/` (format, config, wiki pages, log.md, +index.md) is intended to be committed. diff --git a/docs/hooks/cli_reference.py b/docs/hooks/cli_reference.py new file mode 100644 index 0000000..1342243 --- /dev/null +++ b/docs/hooks/cli_reference.py @@ -0,0 +1,45 @@ +"""mkdocs hook: inject ` --help` into commands.md at build time. + +Replaces the placeholder `{{ cli_reference }}` in docs/commands.md with one +fenced ```text``` block per subcommand, generated by invoking the parser +defined in src/reflect/cli.py. Mirrors agents-cli's docs/hooks pattern. +""" + +from __future__ import annotations + +import argparse +import io +from typing import Any + + +def on_page_markdown( + markdown: str, page: Any, config: Any, files: Any +) -> str: + if "{{ cli_reference }}" not in markdown: + return markdown + + from reflect.cli import build_parser + + parser = build_parser() + sections: list[str] = [] + + # Top-level help + sections.append("## `reflect`\n") + sections.append("```text") + sections.append(parser.format_help().rstrip()) + sections.append("```\n") + + # Per-subcommand help + subparsers_actions = [ + a for a in parser._actions if isinstance(a, argparse._SubParsersAction) + ] + for action in subparsers_actions: + for name, subparser in sorted(action.choices.items()): + sections.append(f"## `reflect {name}`\n") + buf = io.StringIO() + subparser.print_help(file=buf) + sections.append("```text") + sections.append(buf.getvalue().rstrip()) + sections.append("```\n") + + return markdown.replace("{{ cli_reference }}", "\n".join(sections)) diff --git a/docs/index.md b/docs/index.md new file mode 100644 index 0000000..7b82083 --- /dev/null +++ b/docs/index.md @@ -0,0 +1,52 @@ +# reflect + +**Every session teaches the next one.** Cross-session learning for AI coding agents. + +Reflect is a persistent, compounding knowledge base for any repository. It reads raw evidence from [Entire CLI](https://entire.dev) sessions and git history, extracts everything worth remembering — decisions, preferences, patterns, gotchas, business rules, architecture, brand — and compiles it into a wiki at `.reflect/wiki/`. The wiki is indexed by [qmd](https://github.com/qubicfox/qmd-cli) for hybrid search (BM25 + vector + reranking). Agents query qmd directly for project memory — no context injection needed. + +The more sessions you run, the smarter the next one starts. + +## Quick start + +```bash +uv tool install reflect-cli +cd your-repo +reflect init +reflect ingest +``` + +Your next coding session inherits everything reflect has learned. + +## What it does + +```text + Session 1 ──┐ + Session 2 ──┤ Evidence pipeline format.yaml wiki pages + Session 3 ──┤ ──────────────────── ───────────────── ───────────── + Session N ──┘ Entire CLI user-defined qmd-indexed + + git history categories markdown + + reverts + recency + frontmatter +``` + +1. **Evidence**: Entire CLI session checkpoints + git log + revert detection. +2. **Triage** (LLM): plan what knowledge belongs in the wiki. +3. **Write** (LLM): produce one markdown page per durable item. +4. **Index** (qmd): hybrid search across the wiki. + +Subsequent sessions query qmd to recall project memory. No re-ingest needed +unless new evidence arrives — the SessionStart hook detects it automatically. + +## Why this design + +- **Project-scoped** — config + wiki commit to git, travel with the repo, visible to every contributor. +- **Source-agnostic** — wiki pages are plain markdown. Read them, search them, edit them by hand. +- **Bounded budget** — default ingest budget is 10¢ per run; deterministic fallback when no LLM. +- **No context injection** — agents pull on demand via qmd; no startup tax on every prompt. + +## Next steps + +- [Install](install.md) — `uv`, `uvx`, or `pip`. +- [Commands](commands.md) — full CLI reference. +- [Configuration](configuration.md) — env vars and `.reflect/format.yaml` schema. +- [Skill & Hooks](skill.md) — how reflect integrates with Claude Code. +- [Specification](spec.md) — formal `.reflect/` directory format. diff --git a/docs/install.md b/docs/install.md new file mode 100644 index 0000000..812e8df --- /dev/null +++ b/docs/install.md @@ -0,0 +1,70 @@ +# Install + +reflect ships as a Python package called `reflect-cli`. The console script is named `reflect`. + +## With uv (recommended) + +[uv](https://docs.astral.sh/uv/) is fast and handles isolation: + +```bash +uv tool install reflect-cli +``` + +This installs `reflect` into uv's tool bin (typically `~/.local/bin`). Verify: + +```bash +reflect --version +``` + +To upgrade later: + +```bash +uv tool upgrade reflect-cli +# or, from inside any reflect-managed repo: +reflect upgrade +``` + +## Run without installing + +```bash +uvx reflect --help +uvx reflect status +``` + +`uvx` resolves and caches the package on first invocation, then reuses it. + +## With pip + +```bash +pip install reflect-cli +``` + +If you're not using a virtualenv, prefer `pipx`: + +```bash +pipx install reflect-cli +``` + +## From source (development) + +```bash +git clone https://github.com/codeyogi911/reflect +cd reflect +uv sync --all-extras +uv run reflect --help +``` + +`uv sync --all-extras` creates an editable install plus the dev (pytest, ruff, +mypy) and docs (mkdocs-material) groups. + +## Required and optional dependencies + +| Tool | Required? | Provides | Install | +|--------------|-----------|----------------------------------------------|--------------------------------------| +| `git` | required | git history evidence | system package manager | +| `qmd` | required | wiki search index | `npm install -g @tobilu/qmd` | +| `entire` | optional | session-transcript evidence | `curl -fsSL https://entire.io/install.sh \| bash` | +| `claude` CLI | optional | LLM ingest + context (deterministic without) | [claude.ai/code](https://claude.ai/code) | + +`reflect init` will attempt to auto-install qmd (via npm) and Entire CLI if +they're missing. diff --git a/docs/roadmap.md b/docs/roadmap.md new file mode 100644 index 0000000..81a2349 --- /dev/null +++ b/docs/roadmap.md @@ -0,0 +1,102 @@ +# Reflect Roadmap + +**`git` answers "what changed." `reflect` answers "why."** + +--- + +## Current State (v4) + +- A Python CLI + Claude Code skill +- Reads from Entire CLI + git on demand — zero intermediate storage +- Replaceable harness generates context briefings +- Two read paths: passive (context.md) and active (why/search dump raw evidence) +- Session-start hook with freshness tracking + +**What works:** The read path architecture is clean. Harness is replaceable. +**What's missing:** Multi-tool wiring, community harnesses, team workflows. + +--- + +## Phase 1: Universal Read Path + +**Goal:** Any AI coding tool gets the briefing automatically. + +Auto-wire `context.md` into every instruction file format: + +| File | Tool | +|------|------| +| `CLAUDE.md` | Claude Code (done) | +| `.cursor/rules/*.mdc` | Cursor | +| `.github/copilot-instructions.md` | GitHub Copilot | +| `.windsurfrules` | Windsurf | +| `.clinerules` | Cline | + +--- + +## Phase 2: Harness Ecosystem + +**Goal:** Community-contributed harnesses for different use cases. + +- `harness/default.py` — recency-ranked, ships with reflect +- `harness/semantic.py` — embedding-based retrieval +- `harness/summarizer.py` — LLM-powered session summarization +- `harness/legacy-v3.py` — implements the old confidence/decay model + +Harness benchmarking: run two harnesses against the same evidence, compare context quality. This is the Meta-Harness optimization loop made accessible. + +--- + +## Phase 3: Trust & Provenance + +**Goal:** Safe multi-source evidence ingestion. + +When reflect adds adapters for PRs, CI logs, Slack threads — trust matters: + +| Source | Trust Level | +|--------|------------| +| Entire session (human-in-the-loop) | verified | +| Git commits | inferred | +| PR descriptions | inferred | + +Trust boundaries prevent low-quality evidence from flowing into instruction +files. Deferred until multi-source adapters exist. + +--- + +## Phase 4: Team Workflows + +**Goal:** The "why" is shared across the team. + +- GitHub Action on PR merge → captures decisions from PR description +- PR review bot → surfaces relevant evidence for changed files +- `reflect onboard` → generates comprehensive briefing for new contributors + +--- + +## Phase 5: Harness Optimization + +**Goal:** The harness improves itself. + +The Meta-Harness paper shows that searching over harness implementations +outperforms hand-designed ones. With reflect's architecture: + +1. Evidence filesystem exists (Entire + git) +2. Harness is a replaceable script +3. Evaluation signal exists (session outcomes, retry counts) +4. A proposer agent can rewrite the harness and measure results + +This is the long game: reflect becomes the platform for automated harness +engineering. + +--- + +## Priority Matrix + +| Priority | Item | Effort | Impact | +|----------|------|--------|--------| +| **P0** | Multi-tool instruction file wiring | Small | Every AI tool benefits | +| **P1** | Harness ecosystem + benchmarking | Medium | Community contribution | +| **P1** | Additional evidence adapters (PRs, CI) | Medium | Richer evidence | +| **P2** | Trust & provenance model | Small | Enables safe multi-source | +| **P2** | Team workflows (GitHub Action, bot) | Medium | Team-level memory | +| **P3** | Harness optimization loop | Large | Self-improving memory | diff --git a/docs/skill.md b/docs/skill.md new file mode 100644 index 0000000..94f0e33 --- /dev/null +++ b/docs/skill.md @@ -0,0 +1,48 @@ +# Skill & Hooks + +`reflect init` installs a Claude Code skill at `.claude/skills/reflect/` and +hooks at `.claude/skills/reflect/hooks/`. This is how agents discover reflect +without anyone editing `CLAUDE.md` by hand. + +## The skill (`SKILL.md`) + +A single skill file with internal `$ARGUMENTS` dispatch — `/reflect`, +`/reflect ingest`, `/reflect search `, etc. The skill carries: + +- **Top-level scope**: explicit "When to use" / "When NOT to use" sections so + Claude Code can decide whether to invoke the skill at all. +- **Per-command sections** with their own scope and "Common failures" + troubleshooting. +- **qmd query patterns**: when to use `qmd query` vs `qmd search` vs `qmd vsearch`, + which agentic flags (`--json`, `--files`, `--min-score`, `--all`) are worth + reaching for. + +The source of truth lives at `src/reflect/_data/skill/SKILL.md` in the +[reflect repository](https://github.com/codeyogi911/reflect). `reflect init` +copies it into your repo's `.claude/skills/reflect/`. + +## The Keeper agent + +For deeper investigations than the wiki provides, the skill spawns the +**Keeper** subagent (installed at `.claude/agents/keeper.md`). Keeper follows +an evidence ladder: qmd → reflect search/timeline/sessions → raw Entire +checkpoints → git log/show. + +Spawn Keeper when: + +- Tracing a decision across multiple sessions. +- Verifying a pitfall entry before acting on it. +- Distinguishing "what was tried" from "what landed". + +## SessionStart hook + +`hooks/session-start.sh` runs at the start of every Claude Code session. It +checks whether the wiki is stale relative to the current git HEAD and Entire +checkpoints, and prints `REFLECT_WIKI_INGEST` when an ingest is warranted. + +The agent picks up that signal from the skill and runs `reflect ingest`. With +`session_start: manual` in `.reflect/config.yaml`, the hook only prints a hint +instead of triggering ingest. + +The hook is **non-blocking** (always exits 0) so a stale knowledge base never +prevents a session from starting. diff --git a/docs/spec.md b/docs/spec.md new file mode 100644 index 0000000..18773a8 --- /dev/null +++ b/docs/spec.md @@ -0,0 +1,297 @@ +# `.reflect/` Specification + +**Version**: 5.0.0 + +This document specifies the `.reflect/` directory format — a persistent, +compounding knowledge base for any repository. + +--- + +## 1. Design Principles + +1. **Sessions are the source**: All knowledge flows from coding sessions + (Entire CLI transcripts) and git history. No external sources needed — + if something matters, it came up in a session. +2. **Wiki compiles knowledge**: Raw session evidence is compiled into a + structured wiki that compounds over time. The more sessions, the more + reflect knows. +3. **qmd is the reader**: The wiki is indexed by qmd (hybrid BM25 + vector + search). Agents query qmd directly — no context injection needed. +4. **Dynamic categories**: Wiki categories emerge from what the project + actually discusses. Not limited to predefined sections. +5. **Human-reviewable**: All files are plain markdown. The wiki is browsable + by humans and machines alike. +6. **Per-repo scope**: Each repo has its own knowledge base. User-level + memory is handled by agent frameworks. + +--- + +## 2. Directory Layout + +``` +.reflect/ +├── format.yaml # Declarative section config (REQUIRED) +├── config.yaml # Optional operational configuration +├── .last_run # Freshness state (GENERATED, gitignored) +└── wiki/ # Persistent knowledge base (committed) + ├── index.md # Auto-generated table of contents (committed) + ├── log.md # Chronological ingest log (committed) + ├── _archive/ # Archived pages (superseded/resolved) + ├── decisions/ # Why things are the way they are + ├── gotchas/ # Things that burned time + ├── pitfalls/ # Mistakes and failed approaches + ├── open-work/ # Unfinished items + ├── patterns/ # Coding patterns and conventions (dynamic) + ├── preferences/ # User/team preferences (dynamic) + ├── architecture/ # System structure and rationale (dynamic) + ├── business/ # Domain/business knowledge (dynamic) + └── / # Categories created dynamically by triage +``` + +--- + +## 3. Format Config + +The format config at `.reflect/format.yaml` declares seed categories and +context preferences. Categories are NOT limited to what's listed here — +the ingest triage agent can create new categories dynamically. + +```yaml +sections: + - name: Key Decisions & Rationale + purpose: why things are the way they are, not what they are + max_bullets: 8 + recency: 30d + + - name: Gotchas & Friction + purpose: things that burned time or surprised the agent + max_bullets: 6 + recency: 14d + + - name: Open Work + purpose: unfinished items a new session should pick up + max_bullets: 5 + recency: 7d + + - name: Critical Pitfalls + purpose: agent mistakes, reverted work, and failed approaches + max_bullets: 8 + recency: 90d + +citations: required +max_lines: 150 +``` + +--- + +## 4. Knowledge Extraction Pipeline + +``` +Sessions (Entire CLI) Git History format.yaml (seed categories) +────────────────────── ──────────── ────────────────────────────── + │ │ │ + └────────────┬────────────┘ │ + ▼ │ + Evidence Document │ + │ │ + ▼ ▼ + Triage Subagent ◄──── existing wiki index + │ + ▼ + JSON Plan (create / update / resolve) + │ + ▼ + Write Subagent (concurrent) + │ + ▼ + .reflect/wiki/ pages + index.md + │ + ▼ + qmd re-index (BM25 + vector embeddings) +``` + +The triage subagent extracts ALL knowledge from sessions: +- Decisions and their rationale +- Preferences and corrections +- Patterns and conventions +- Gotchas and friction +- Pitfalls and failed approaches +- Architecture and system design +- Business rules and domain knowledge +- Brand guidelines and style choices +- Deployment and operational guides +- Any other project-specific knowledge + +Categories are dynamic — the triage agent proposes new categories +when knowledge doesn't fit existing ones. Directories are created +automatically. + +--- + +## 5. Wiki Page Format + +Each wiki page is a markdown file with YAML frontmatter: + +```markdown +--- +created: 2026-04-07 +updated: 2026-04-07 +sources: + - checkpoint: abc123def456 + - commit: def789 +tags: [architecture, format-yaml] +status: active +related: + - decisions/zero-storage-architecture.md +--- + +# Page Title + +Body text (200-500 words, synthesized knowledge with inline citations). +``` + +Frontmatter fields: +- **created/updated**: ISO dates for freshness tracking +- **sources**: provenance — checkpoint IDs or commit SHAs cited +- **tags**: 1-4 topic tags for filtering and search +- **status**: `active` (searchable), `superseded`, or `resolved` +- **related**: cross-references to other wiki pages + +--- + +## 6. index.md + +A committed table of contents, regenerated after every ingest. Groups +active pages by category with one-line summaries. Growth is managed by: +- `reflect lint --fix` archives resolved/superseded pages +- Archived pages are excluded from the index +- The triage agent prefers updating existing pages over creating duplicates + +--- + +## 7. qmd Integration (Required) + +qmd is the search backbone. The wiki is registered as a qmd collection +named `reflect-` to prevent collisions across repos. + +```bash +# Registered automatically by reflect init +qmd collection add .reflect/wiki/ --name reflect-myapp + +# Re-indexed automatically after every ingest +qmd update -c reflect-myapp && qmd embed -c reflect-myapp + +# Agents query directly +qmd query "why do we use Supabase?" -c reflect-myapp +qmd search "brand colors" -c reflect-myapp +``` + +--- + +## 8. Operations + +- **Ingest** (`reflect ingest`): Two-step subagent pipeline. Extracts all + knowledge from new sessions/commits, updates wiki, re-indexes qmd. +- **Lint** (`reflect lint`): Health checks — stale, orphan, duplicate, + coverage, resolved. `--fix` auto-archives and resolves. +- **Search** (`reflect search`): Text search across wiki + raw sources. + For semantic search, use qmd directly. +- **Status** (`reflect status`): Evidence sources, wiki state, qmd health. + +--- + +## 9. Configuration + +**Location**: `.reflect/config.yaml` (optional) + +```yaml +max_lines: 150 # Line budget for context.md (if generated) +session_start: auto # "auto" ingests on session start; "manual" reminds +``` + +--- + +## 10. Freshness Tracking + +**Location**: `.reflect/.last_run` (generated, gitignored) + +```json +{ + "last_checkpoint": "", + "last_git_sha": "", + "timestamp": "" +} +``` + +The session-start hook compares this against current state to decide whether +to trigger `reflect ingest`. + +--- + +## 11. Git Conventions + +**Commit**: `.reflect/format.yaml`, `.reflect/config.yaml`, `.reflect/wiki/` +**Gitignore**: `.reflect/.last_run` + +### Branch Policy + +The wiki is **project memory** and should live on the default branch (`main`), +not on feature branches. This is the recommended workflow: + +``` +1. Develop on feature branches as usual — sessions accumulate in Entire CLI +2. Merge feature branch into main when ready +3. On main, run: reflect ingest +4. The wiki on main now reflects all evidence, including branch sessions +``` + +**Why this works:** +- Entire CLI checkpoints are stored globally, not per-branch. `reflect ingest` + uses `entire explain --search-all` to pull checkpoints from any branch, so + ingesting on main still captures conversations that happened on feature + branches. +- Git history is fully visible from any branch ancestor, so commits made on + feature branches are visible to the ingest pipeline once merged. + +**Why not branch-local wikis:** +- Knowledge silos: pages on branch A don't appear on branch B +- Merge conflicts: `index.md` and shared pages conflict on every merge +- Stale qmd index: the index doesn't auto-rebuild on branch switch + +**Guardrail**: `reflect ingest` prints a warning when run on a non-default +branch. Use `--force` to suppress it if you intentionally want a branch-local +wiki (e.g., for experimentation). + +--- + +## 12. Security + +- Never store credentials, API keys, or secrets in wiki pages. +- Evidence from session transcripts is treated as untrusted data in the + subagent system prompt. + +--- + +## Changelog + +### 5.0.0 (2026-04-12) +- Vision: reflect is now a universal project knowledge base, not just session memory. +- Required: qmd is a required dependency (auto-installed by `reflect init`). +- Changed: Triage subagent extracts ALL knowledge from sessions (decisions, + preferences, patterns, brand, business, etc.), not just coding signals. +- Added: Dynamic wiki categories — triage can create new categories on the fly. +- Added: Committed `index.md` — auto-generated table of contents. +- Added: Automatic qmd re-indexing after every ingest. +- Changed: Skill no longer injects context.md — agents query qmd directly. +- Changed: Session-start hook signals ingest only (no context generation). + +### 4.0.0 (2026-04-07) +- Architecture: added optional wiki layer (`.reflect/wiki/`). +- Added: `reflect ingest`, `reflect lint`. +- Added: qmd integration for hybrid search (optional). + +### 3.0.0 (2026-04-04) +- Architecture: replaced executable harness with declarative `format.yaml`. + +### 2.0.0 (2026-04-03) +- Complete architecture redesign: zero storage, replaceable harness. diff --git a/mkdocs.yml b/mkdocs.yml new file mode 100644 index 0000000..538ecdd --- /dev/null +++ b/mkdocs.yml @@ -0,0 +1,64 @@ +site_name: reflect +site_description: Repo-owned memory for AI coding agents +site_url: https://codeyogi911.github.io/reflect/ +repo_url: https://github.com/codeyogi911/reflect +repo_name: codeyogi911/reflect +edit_uri: edit/main/docs/ + +docs_dir: docs + +theme: + name: material + palette: + - scheme: default + primary: indigo + accent: indigo + toggle: + icon: material/weather-night + name: Switch to dark mode + - scheme: slate + primary: indigo + accent: indigo + toggle: + icon: material/weather-sunny + name: Switch to light mode + features: + - navigation.instant + - navigation.tracking + - navigation.sections + - navigation.expand + - navigation.top + - toc.follow + - content.code.copy + - content.action.edit + - search.suggest + - search.highlight + +markdown_extensions: + - admonition + - pymdownx.details + - pymdownx.superfences + - pymdownx.highlight: + anchor_linenums: true + - pymdownx.inlinehilite + - pymdownx.tabbed: + alternate_style: true + - pymdownx.tasklist: + custom_checkbox: true + - toc: + permalink: true + +hooks: + - docs/hooks/cli_reference.py + +exclude_docs: | + badges/ + +nav: + - Home: index.md + - Install: install.md + - Commands: commands.md + - Configuration: configuration.md + - Skill & Hooks: skill.md + - Specification: spec.md + - Roadmap: roadmap.md From ecd3f6b4eabbf3dcf2fb648fa954d9144c8c683c Mon Sep 17 00:00:00 2001 From: Claude Date: Sat, 25 Apr 2026 04:04:33 +0000 Subject: [PATCH 7/7] Phase 6: GitHub Actions CI + docs deploy workflows MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Replace the old smoke-only CI with a multi-job pipeline; add a docs deploy workflow. ci.yml — three jobs: - lint: ruff check + ruff format --check + mypy on src/reflect. - test: pytest with coverage on Python 3.11 / 3.12 / 3.13 (matrix). - smoke: scripts/smoke.sh (depends on lint + test passing first). All jobs use astral-sh/setup-uv@v3 with caching enabled. uv resolves the dev/docs extras from pyproject.toml; no separate requirements files. docs.yml — build + deploy: - Builds the mkdocs-material site with --strict on every push to main. - Uploads as a Pages artifact and deploys via actions/deploy-pages@v4. - Uses concurrency group docs- with cancel-in-progress: false so in-flight deploys finish even if a newer commit lands. - Requires `pages: write` and `id-token: write`; assumes GitHub Pages is configured to deploy from Actions in repo settings. Verified locally: ruff check, ruff format check, mypy, pytest (20 passing), and mkdocs build --strict all green. https://claude.ai/code/session_01Kh1P8oy4huJcEEWnBrJK4X --- .github/workflows/ci.yml | 59 ++++++++++++++++++++++++++++++++++---- .github/workflows/docs.yml | 48 +++++++++++++++++++++++++++++++ 2 files changed, 102 insertions(+), 5 deletions(-) create mode 100644 .github/workflows/docs.yml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d01d649..0add5ad 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -6,19 +6,68 @@ on: pull_request: branches: [main] +permissions: + contents: read + jobs: - smoke: + lint: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - name: Set up uv + uses: astral-sh/setup-uv@v3 + with: + enable-cache: true + + - name: Install dev dependencies + run: uv sync --extra dev + + - name: ruff check + run: uv run ruff check src/reflect tests + + - name: ruff format check + run: uv run ruff format --check src/reflect tests + + - name: mypy + run: uv run mypy src/reflect + + test: runs-on: ubuntu-latest strategy: + fail-fast: false matrix: - python-version: ["3.11", "3.12"] + python-version: ["3.11", "3.12", "3.13"] steps: - uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v5 + - name: Set up uv + uses: astral-sh/setup-uv@v3 with: - python-version: ${{ matrix.python-version }} + enable-cache: true + + - name: Configure Python ${{ matrix.python-version }} + run: uv python pin ${{ matrix.python-version }} + + - name: Install dev dependencies + run: uv sync --extra dev + + - name: Run pytest + run: uv run pytest --cov=reflect --cov-report=term-missing + + smoke: + runs-on: ubuntu-latest + needs: [lint, test] + steps: + - uses: actions/checkout@v4 + + - name: Set up uv + uses: astral-sh/setup-uv@v3 + with: + enable-cache: true + + - name: Install package + run: uv sync --all-extras - name: Smoke test run: bash scripts/smoke.sh diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml new file mode 100644 index 0000000..fbf4f51 --- /dev/null +++ b/.github/workflows/docs.yml @@ -0,0 +1,48 @@ +name: Docs + +on: + push: + branches: [main] + workflow_dispatch: + +permissions: + contents: read + pages: write + id-token: write + +concurrency: + group: docs-${{ github.ref }} + cancel-in-progress: false + +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - name: Set up uv + uses: astral-sh/setup-uv@v3 + with: + enable-cache: true + + - name: Install docs dependencies + run: uv sync --extra docs + + - name: Build site + run: uv run mkdocs build --strict + + - name: Upload artifact + uses: actions/upload-pages-artifact@v3 + with: + path: site + + deploy: + needs: build + runs-on: ubuntu-latest + environment: + name: github-pages + url: ${{ steps.deployment.outputs.page_url }} + steps: + - name: Deploy to GitHub Pages + id: deployment + uses: actions/deploy-pages@v4