Fusing images issues

[lacan]

Exception when using "Quick Display"

When trying out Quick Display of the new MultiView Reconstruction Application I get the following error
Exception in thread "Thread-20" java.lang.NoClassDefFoundError: net/imglib2/cache/img/ReadOnlyCachedCellImgOptions at spim.process.fusion.FusionHelper.cacheRandomAccessibleInterval(FusionHelper.java:104) at spim.fiji.spimdata.explorer.popup.DisplayFusedImagesPopup$DisplayVirtualFused$1.run(DisplayFusedImagesPopup.java:238) at java.lang.Thread.run(Thread.java:745)

Exception with Cached Fusion, which seems linked to the same issue as above

Exception in thread "Thread-22" java.lang.NoClassDefFoundError: net/imglib2/cache/img/ReadOnlyCachedCellImgOptions at spim.process.fusion.FusionHelper.cacheRandomAccessibleInterval(FusionHelper.java:104) at spim.fiji.spimdata.explorer.popup.DisplayFusedImagesPopup$DisplayVirtualFused$1.run(DisplayFusedImagesPopup.java:238) at java.lang.Thread.run(Thread.java:745)

Fused, Virtual

Images are called Fused, Virtual even if we use the 'precompute' option

[tpietzsch]

@lacan Fiji had an outdated version imglib2-cache-1.0.0-beta-5.jar. I just uploaded the most recent one. Could you try whether this solves the issue?

[lacan]

@tpietzsch Hi!
Unfortunately it has made the options no longer show up on the menu. sometimes it says Cached, others Virtual or Precomputed

Similarily clicking on "Fuse Images..." now does nothing. There is no Console output or error message to help make sense of the situation.

Best
Oli

[tpietzsch]

hmm, what a mess... I guess we will have to wait for @StephanPreibisch to comment on that.

[hoerldavid]

Hi @lacan,
the menu items should start working once you define at least one Bounding Box. The NoClassDefFoundError should also be gone thanks to the update by @tpietzsch.

Just to make sure we are on the same page:
You are using the new SPIM_Registration from the BigStitcher update site?

All the best,
David

[hoerldavid]

Regarding the grayed out menu item:
This indicates how the Quick Display will be done (cached by default).
Clicking it will cycle through the options (Cached -> Precomputed -> Virtual -> ... )

[StephanPreibisch]

Hi, yes, we should show another message if no bounding boxes are defined @hoerldavid ... we'll do that tomorrow in Munich. But the missing imglib2-cache was definitely the problem, thanks for fixing that @tpietzsch. @lacan - you need to define bounding boxes for the quick display to work.

[hoerldavid]

Finally, regarding the Fused, Virtual image title:
This was indeed hardcoded. I just enabled it to change according to the fusion method used.
This will be part of the next release.

[StephanPreibisch]

thanks @hoerldavid

[tpietzsch]

👍

[tpietzsch]

Regarding the grayed out menu item:
This indicates how the Quick Display will be done (cached by default).
Clicking it will cycle through the options (Cached -> Precomputed -> Virtual -> ... )

Seems a bit unintuitive. Why not actually offer 3 options with the active one checked?
(Like this)

| Quick Display | --> | X Cached      |
                      |   Precomputed |
                      |   Virtual     |

...but maybe I also misunderstand what this actually is expected to do...

[StephanPreibisch]

That sounds reasonable, let's do that ... it is in alpha status after all :)