From 2877d46c7f542e685b2e8027057fed7943442785 Mon Sep 17 00:00:00 2001 From: Jean Helie Date: Tue, 19 May 2020 09:41:40 +0100 Subject: [PATCH 1/3] add individual state level admin files --- data/admin_units/USA/Alabama_admin.txt | 160 ++++++++++++++++++ data/admin_units/{ => USA}/Alaska_admin.txt | 0 .../{ => USA}/American_Samoa_admin.txt | 0 data/admin_units/USA/Arizona_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Arkansas_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/California_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Colorado_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Connecticut_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Delaware_admin.txt | 160 ++++++++++++++++++ .../USA/District_Of_Columbia_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Florida_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Georgia_admin.txt | 160 ++++++++++++++++++ data/admin_units/{ => USA}/Guam_admin.txt | 0 data/admin_units/{ => USA}/Hawaii_admin.txt | 0 data/admin_units/USA/Idaho_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Illinois_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Indiana_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Iowa_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Kansas_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Kentucky_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Louisiana_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Maine_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Maryland_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Massachusetts_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Michigan_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Minnesota_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Mississippi_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Missouri_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Montana_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Nebraska_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Nevada_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/New_Hampshire_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/New_Jersey_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/New_Mexico_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/New_York_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/North_Carolina_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/North_Dakota_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Ohio_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Oklahoma_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Oregon_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Pennsylvania_admin.txt | 160 ++++++++++++++++++ .../{ => USA}/Puerto_Rico_admin.txt | 0 data/admin_units/USA/Rhode_Island_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/South_Carolina_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/South_Dakota_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Tennessee_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Texas_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Utah_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Vermont_admin.txt | 160 ++++++++++++++++++ .../{ => USA}/Virgin_Islands_US_admin.txt | 0 data/admin_units/USA/Virginia_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Washington_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/West_Virginia_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Wisconsin_admin.txt | 160 ++++++++++++++++++ data/admin_units/USA/Wyoming_admin.txt | 160 ++++++++++++++++++ 55 files changed, 7840 insertions(+) create mode 100644 data/admin_units/USA/Alabama_admin.txt rename data/admin_units/{ => USA}/Alaska_admin.txt (100%) rename data/admin_units/{ => USA}/American_Samoa_admin.txt (100%) create mode 100644 data/admin_units/USA/Arizona_admin.txt create mode 100644 data/admin_units/USA/Arkansas_admin.txt create mode 100644 data/admin_units/USA/California_admin.txt create mode 100644 data/admin_units/USA/Colorado_admin.txt create mode 100644 data/admin_units/USA/Connecticut_admin.txt create mode 100644 data/admin_units/USA/Delaware_admin.txt create mode 100644 data/admin_units/USA/District_Of_Columbia_admin.txt create mode 100644 data/admin_units/USA/Florida_admin.txt create mode 100644 data/admin_units/USA/Georgia_admin.txt rename data/admin_units/{ => USA}/Guam_admin.txt (100%) rename data/admin_units/{ => USA}/Hawaii_admin.txt (100%) create mode 100644 data/admin_units/USA/Idaho_admin.txt create mode 100644 data/admin_units/USA/Illinois_admin.txt create mode 100644 data/admin_units/USA/Indiana_admin.txt create mode 100644 data/admin_units/USA/Iowa_admin.txt create mode 100644 data/admin_units/USA/Kansas_admin.txt create mode 100644 data/admin_units/USA/Kentucky_admin.txt create mode 100644 data/admin_units/USA/Louisiana_admin.txt create mode 100644 data/admin_units/USA/Maine_admin.txt create mode 100644 data/admin_units/USA/Maryland_admin.txt create mode 100644 data/admin_units/USA/Massachusetts_admin.txt create mode 100644 data/admin_units/USA/Michigan_admin.txt create mode 100644 data/admin_units/USA/Minnesota_admin.txt create mode 100644 data/admin_units/USA/Mississippi_admin.txt create mode 100644 data/admin_units/USA/Missouri_admin.txt create mode 100644 data/admin_units/USA/Montana_admin.txt create mode 100644 data/admin_units/USA/Nebraska_admin.txt create mode 100644 data/admin_units/USA/Nevada_admin.txt create mode 100644 data/admin_units/USA/New_Hampshire_admin.txt create mode 100644 data/admin_units/USA/New_Jersey_admin.txt create mode 100644 data/admin_units/USA/New_Mexico_admin.txt create mode 100644 data/admin_units/USA/New_York_admin.txt create mode 100644 data/admin_units/USA/North_Carolina_admin.txt create mode 100644 data/admin_units/USA/North_Dakota_admin.txt create mode 100644 data/admin_units/USA/Ohio_admin.txt create mode 100644 data/admin_units/USA/Oklahoma_admin.txt create mode 100644 data/admin_units/USA/Oregon_admin.txt create mode 100644 data/admin_units/USA/Pennsylvania_admin.txt rename data/admin_units/{ => USA}/Puerto_Rico_admin.txt (100%) create mode 100644 data/admin_units/USA/Rhode_Island_admin.txt create mode 100644 data/admin_units/USA/South_Carolina_admin.txt create mode 100644 data/admin_units/USA/South_Dakota_admin.txt create mode 100644 data/admin_units/USA/Tennessee_admin.txt create mode 100644 data/admin_units/USA/Texas_admin.txt create mode 100644 data/admin_units/USA/Utah_admin.txt create mode 100644 data/admin_units/USA/Vermont_admin.txt rename data/admin_units/{ => USA}/Virgin_Islands_US_admin.txt (100%) create mode 100644 data/admin_units/USA/Virginia_admin.txt create mode 100644 data/admin_units/USA/Washington_admin.txt create mode 100644 data/admin_units/USA/West_Virginia_admin.txt create mode 100644 data/admin_units/USA/Wisconsin_admin.txt create mode 100644 data/admin_units/USA/Wyoming_admin.txt diff --git a/data/admin_units/USA/Alabama_admin.txt b/data/admin_units/USA/Alabama_admin.txt new file mode 100644 index 000000000..f3ff3056c --- /dev/null +++ b/data/admin_units/USA/Alabama_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Alabama + +[Codes and country/province names for admin units] +610100 United_States Alabama + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/Alaska_admin.txt b/data/admin_units/USA/Alaska_admin.txt similarity index 100% rename from data/admin_units/Alaska_admin.txt rename to data/admin_units/USA/Alaska_admin.txt diff --git a/data/admin_units/American_Samoa_admin.txt b/data/admin_units/USA/American_Samoa_admin.txt similarity index 100% rename from data/admin_units/American_Samoa_admin.txt rename to data/admin_units/USA/American_Samoa_admin.txt diff --git a/data/admin_units/USA/Arizona_admin.txt b/data/admin_units/USA/Arizona_admin.txt new file mode 100644 index 000000000..79b52cce5 --- /dev/null +++ b/data/admin_units/USA/Arizona_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Arizona + +[Codes and country/province names for admin units] +610300 United_States Arizona + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Arkansas_admin.txt b/data/admin_units/USA/Arkansas_admin.txt new file mode 100644 index 000000000..2e213d54a --- /dev/null +++ b/data/admin_units/USA/Arkansas_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Arkansas + +[Codes and country/province names for admin units] +610400 United_States Arkansas + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/California_admin.txt b/data/admin_units/USA/California_admin.txt new file mode 100644 index 000000000..b4e8a2f7b --- /dev/null +++ b/data/admin_units/USA/California_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +California + +[Codes and country/province names for admin units] +610500 United_States California + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Colorado_admin.txt b/data/admin_units/USA/Colorado_admin.txt new file mode 100644 index 000000000..caab66550 --- /dev/null +++ b/data/admin_units/USA/Colorado_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Colorado + +[Codes and country/province names for admin units] +610600 United_States Colorado + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Connecticut_admin.txt b/data/admin_units/USA/Connecticut_admin.txt new file mode 100644 index 000000000..8e8c28081 --- /dev/null +++ b/data/admin_units/USA/Connecticut_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Connecticut + +[Codes and country/province names for admin units] +610700 United_States Connecticut + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Delaware_admin.txt b/data/admin_units/USA/Delaware_admin.txt new file mode 100644 index 000000000..79b279c1a --- /dev/null +++ b/data/admin_units/USA/Delaware_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Delaware + +[Codes and country/province names for admin units] +610800 United_States Delaware + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/District_Of_Columbia_admin.txt b/data/admin_units/USA/District_Of_Columbia_admin.txt new file mode 100644 index 000000000..feba299f2 --- /dev/null +++ b/data/admin_units/USA/District_Of_Columbia_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +District_of_Columbia + +[Codes and country/province names for admin units] +610900 United_States District_of_Columbia + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Florida_admin.txt b/data/admin_units/USA/Florida_admin.txt new file mode 100644 index 000000000..ee8904a13 --- /dev/null +++ b/data/admin_units/USA/Florida_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Florida + +[Codes and country/province names for admin units] +611000 United_States Florida + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Georgia_admin.txt b/data/admin_units/USA/Georgia_admin.txt new file mode 100644 index 000000000..112f4cf34 --- /dev/null +++ b/data/admin_units/USA/Georgia_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Georgia + +[Codes and country/province names for admin units] +611100 United_States Georgia + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/Guam_admin.txt b/data/admin_units/USA/Guam_admin.txt similarity index 100% rename from data/admin_units/Guam_admin.txt rename to data/admin_units/USA/Guam_admin.txt diff --git a/data/admin_units/Hawaii_admin.txt b/data/admin_units/USA/Hawaii_admin.txt similarity index 100% rename from data/admin_units/Hawaii_admin.txt rename to data/admin_units/USA/Hawaii_admin.txt diff --git a/data/admin_units/USA/Idaho_admin.txt b/data/admin_units/USA/Idaho_admin.txt new file mode 100644 index 000000000..86b0cbbb0 --- /dev/null +++ b/data/admin_units/USA/Idaho_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Idaho + +[Codes and country/province names for admin units] +611300 United_States Idaho + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Illinois_admin.txt b/data/admin_units/USA/Illinois_admin.txt new file mode 100644 index 000000000..f1d1fbb16 --- /dev/null +++ b/data/admin_units/USA/Illinois_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Illinois + +[Codes and country/province names for admin units] +611400 United_States Illinois + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Indiana_admin.txt b/data/admin_units/USA/Indiana_admin.txt new file mode 100644 index 000000000..3c3e48ea7 --- /dev/null +++ b/data/admin_units/USA/Indiana_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Indiana + +[Codes and country/province names for admin units] +611500 United_States Indiana + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Iowa_admin.txt b/data/admin_units/USA/Iowa_admin.txt new file mode 100644 index 000000000..d01221842 --- /dev/null +++ b/data/admin_units/USA/Iowa_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Iowa + +[Codes and country/province names for admin units] +611600 United_States Iowa + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Kansas_admin.txt b/data/admin_units/USA/Kansas_admin.txt new file mode 100644 index 000000000..6782f11d2 --- /dev/null +++ b/data/admin_units/USA/Kansas_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Kansas + +[Codes and country/province names for admin units] +611700 United_States Kansas + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Kentucky_admin.txt b/data/admin_units/USA/Kentucky_admin.txt new file mode 100644 index 000000000..b231982f0 --- /dev/null +++ b/data/admin_units/USA/Kentucky_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Kentucky + +[Codes and country/province names for admin units] +611800 United_States Kentucky + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Louisiana_admin.txt b/data/admin_units/USA/Louisiana_admin.txt new file mode 100644 index 000000000..da94b7d1c --- /dev/null +++ b/data/admin_units/USA/Louisiana_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Louisiana + +[Codes and country/province names for admin units] +611900 United_States Louisiana + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Maine_admin.txt b/data/admin_units/USA/Maine_admin.txt new file mode 100644 index 000000000..13af9086f --- /dev/null +++ b/data/admin_units/USA/Maine_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Maine + +[Codes and country/province names for admin units] +612000 United_States Maine + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Maryland_admin.txt b/data/admin_units/USA/Maryland_admin.txt new file mode 100644 index 000000000..53530396b --- /dev/null +++ b/data/admin_units/USA/Maryland_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Maryland + +[Codes and country/province names for admin units] +612100 United_States Maryland + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Massachusetts_admin.txt b/data/admin_units/USA/Massachusetts_admin.txt new file mode 100644 index 000000000..08e20b80b --- /dev/null +++ b/data/admin_units/USA/Massachusetts_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Massachusetts + +[Codes and country/province names for admin units] +612200 United_States Massachusetts + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Michigan_admin.txt b/data/admin_units/USA/Michigan_admin.txt new file mode 100644 index 000000000..2c3f35e69 --- /dev/null +++ b/data/admin_units/USA/Michigan_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Michigan + +[Codes and country/province names for admin units] +612300 United_States Michigan + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Minnesota_admin.txt b/data/admin_units/USA/Minnesota_admin.txt new file mode 100644 index 000000000..506be1cca --- /dev/null +++ b/data/admin_units/USA/Minnesota_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Minnesota + +[Codes and country/province names for admin units] +612400 United_States Minnesota + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Mississippi_admin.txt b/data/admin_units/USA/Mississippi_admin.txt new file mode 100644 index 000000000..60a3f1456 --- /dev/null +++ b/data/admin_units/USA/Mississippi_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Mississippi + +[Codes and country/province names for admin units] +612500 United_States Mississippi + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Missouri_admin.txt b/data/admin_units/USA/Missouri_admin.txt new file mode 100644 index 000000000..62b4e0e48 --- /dev/null +++ b/data/admin_units/USA/Missouri_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Missouri + +[Codes and country/province names for admin units] +612600 United_States Missouri + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Montana_admin.txt b/data/admin_units/USA/Montana_admin.txt new file mode 100644 index 000000000..3392a920f --- /dev/null +++ b/data/admin_units/USA/Montana_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Montana + +[Codes and country/province names for admin units] +612700 United_States Montana + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Nebraska_admin.txt b/data/admin_units/USA/Nebraska_admin.txt new file mode 100644 index 000000000..f13b95084 --- /dev/null +++ b/data/admin_units/USA/Nebraska_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Nebraska + +[Codes and country/province names for admin units] +612800 United_States Nebraska + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Nevada_admin.txt b/data/admin_units/USA/Nevada_admin.txt new file mode 100644 index 000000000..87bb32da5 --- /dev/null +++ b/data/admin_units/USA/Nevada_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Nevada + +[Codes and country/province names for admin units] +612900 United_States Nevada + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/New_Hampshire_admin.txt b/data/admin_units/USA/New_Hampshire_admin.txt new file mode 100644 index 000000000..0e84f2c2c --- /dev/null +++ b/data/admin_units/USA/New_Hampshire_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +New_Hampshire + +[Codes and country/province names for admin units] +613000 United_States New_Hampshire + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/New_Jersey_admin.txt b/data/admin_units/USA/New_Jersey_admin.txt new file mode 100644 index 000000000..f48eb6b3f --- /dev/null +++ b/data/admin_units/USA/New_Jersey_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +New_Jersey + +[Codes and country/province names for admin units] +613100 United_States New_Jersey + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/New_Mexico_admin.txt b/data/admin_units/USA/New_Mexico_admin.txt new file mode 100644 index 000000000..ddff817cf --- /dev/null +++ b/data/admin_units/USA/New_Mexico_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +New_Mexico + +[Codes and country/province names for admin units] +613200 United_States New_Mexico + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/New_York_admin.txt b/data/admin_units/USA/New_York_admin.txt new file mode 100644 index 000000000..5eefa66ff --- /dev/null +++ b/data/admin_units/USA/New_York_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +New_York + +[Codes and country/province names for admin units] +613300 United_States New_York + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/North_Carolina_admin.txt b/data/admin_units/USA/North_Carolina_admin.txt new file mode 100644 index 000000000..7b1b45985 --- /dev/null +++ b/data/admin_units/USA/North_Carolina_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +North_Carolina + +[Codes and country/province names for admin units] +613400 United_States North_Carolina + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/North_Dakota_admin.txt b/data/admin_units/USA/North_Dakota_admin.txt new file mode 100644 index 000000000..d3def0e7b --- /dev/null +++ b/data/admin_units/USA/North_Dakota_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +North_Dakota + +[Codes and country/province names for admin units] +613500 United_States North_Dakota + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Ohio_admin.txt b/data/admin_units/USA/Ohio_admin.txt new file mode 100644 index 000000000..d4612e245 --- /dev/null +++ b/data/admin_units/USA/Ohio_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Ohio + +[Codes and country/province names for admin units] +613600 United_States Ohio + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Oklahoma_admin.txt b/data/admin_units/USA/Oklahoma_admin.txt new file mode 100644 index 000000000..5dbbade03 --- /dev/null +++ b/data/admin_units/USA/Oklahoma_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Oklahoma + +[Codes and country/province names for admin units] +613700 United_States Oklahoma + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Oregon_admin.txt b/data/admin_units/USA/Oregon_admin.txt new file mode 100644 index 000000000..5195ff0c9 --- /dev/null +++ b/data/admin_units/USA/Oregon_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Oregon + +[Codes and country/province names for admin units] +613800 United_States Oregon + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Pennsylvania_admin.txt b/data/admin_units/USA/Pennsylvania_admin.txt new file mode 100644 index 000000000..8e68babea --- /dev/null +++ b/data/admin_units/USA/Pennsylvania_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Pennsylvania + +[Codes and country/province names for admin units] +613900 United_States Pennsylvania + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/Puerto_Rico_admin.txt b/data/admin_units/USA/Puerto_Rico_admin.txt similarity index 100% rename from data/admin_units/Puerto_Rico_admin.txt rename to data/admin_units/USA/Puerto_Rico_admin.txt diff --git a/data/admin_units/USA/Rhode_Island_admin.txt b/data/admin_units/USA/Rhode_Island_admin.txt new file mode 100644 index 000000000..aa2940e9a --- /dev/null +++ b/data/admin_units/USA/Rhode_Island_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Rhode_Island + +[Codes and country/province names for admin units] +614000 United_States Rhode_Island + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/South_Carolina_admin.txt b/data/admin_units/USA/South_Carolina_admin.txt new file mode 100644 index 000000000..b3d3ceabf --- /dev/null +++ b/data/admin_units/USA/South_Carolina_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +South_Carolina + +[Codes and country/province names for admin units] +614100 United_States South_Carolina + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/South_Dakota_admin.txt b/data/admin_units/USA/South_Dakota_admin.txt new file mode 100644 index 000000000..bb649f0d3 --- /dev/null +++ b/data/admin_units/USA/South_Dakota_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +South_Dakota + +[Codes and country/province names for admin units] +614200 United_States South_Dakota + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Tennessee_admin.txt b/data/admin_units/USA/Tennessee_admin.txt new file mode 100644 index 000000000..6667f6ad7 --- /dev/null +++ b/data/admin_units/USA/Tennessee_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Tennessee + +[Codes and country/province names for admin units] +614300 United_States Tennessee + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Texas_admin.txt b/data/admin_units/USA/Texas_admin.txt new file mode 100644 index 000000000..10bbe99cf --- /dev/null +++ b/data/admin_units/USA/Texas_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Texas + +[Codes and country/province names for admin units] +614400 United_States Texas + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Utah_admin.txt b/data/admin_units/USA/Utah_admin.txt new file mode 100644 index 000000000..29e8b8700 --- /dev/null +++ b/data/admin_units/USA/Utah_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Utah + +[Codes and country/province names for admin units] +614500 United_States Utah + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Vermont_admin.txt b/data/admin_units/USA/Vermont_admin.txt new file mode 100644 index 000000000..94efafaaf --- /dev/null +++ b/data/admin_units/USA/Vermont_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Vermont + +[Codes and country/province names for admin units] +614600 United_States Vermont + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/Virgin_Islands_US_admin.txt b/data/admin_units/USA/Virgin_Islands_US_admin.txt similarity index 100% rename from data/admin_units/Virgin_Islands_US_admin.txt rename to data/admin_units/USA/Virgin_Islands_US_admin.txt diff --git a/data/admin_units/USA/Virginia_admin.txt b/data/admin_units/USA/Virginia_admin.txt new file mode 100644 index 000000000..200f39e21 --- /dev/null +++ b/data/admin_units/USA/Virginia_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Virginia + +[Codes and country/province names for admin units] +614700 United_States Virginia + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Washington_admin.txt b/data/admin_units/USA/Washington_admin.txt new file mode 100644 index 000000000..7e22a8217 --- /dev/null +++ b/data/admin_units/USA/Washington_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Washington + +[Codes and country/province names for admin units] +614800 United_States Washington + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/West_Virginia_admin.txt b/data/admin_units/USA/West_Virginia_admin.txt new file mode 100644 index 000000000..fcd043066 --- /dev/null +++ b/data/admin_units/USA/West_Virginia_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +West_Virginia + +[Codes and country/province names for admin units] +614900 United_States West_Virginia + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Wisconsin_admin.txt b/data/admin_units/USA/Wisconsin_admin.txt new file mode 100644 index 000000000..3d10d1ea5 --- /dev/null +++ b/data/admin_units/USA/Wisconsin_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Wisconsin + +[Codes and country/province names for admin units] +615000 United_States Wisconsin + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 diff --git a/data/admin_units/USA/Wyoming_admin.txt b/data/admin_units/USA/Wyoming_admin.txt new file mode 100644 index 000000000..078758f5f --- /dev/null +++ b/data/admin_units/USA/Wyoming_admin.txt @@ -0,0 +1,160 @@ +[Number of seed locations] +1 + +[Initial number of infecteds] +100 + +[Administrative unit to seed initial infection into] +0 + +[Population size] +338798532 + +[ONS pop proj] + + +[Fix population size at specified value] +0 + +[Number of countries to include] +0 + +[List of names of countries to include] +United_States + +[Number of level 1 administrative units to include] +1 + +[List of level 1 administrative units to include] +Wyoming + +[Codes and country/province names for admin units] +615100 United_States Wyoming + +[Mask for level 1 administrative units] +100000 + +[Divisor for level 1 administrative units] +100 + +[Divisor for countries] +100000 + +[Correct administrative unit populations] +0 + +[Age distribution of population] +0.059444636 0.060558887 0.063713953 0.064177457 0.067246426 0.072009485 0.069644395 0.065303982 0.061312498 0.060585008 0.062168104 0.065081866 0.062444041 0.053833488 0.043367819 0.029388689 0.039719265 + +[ONS proj for 2020] + + +[Household size distribution] +0.283708848 0.345103011 0.150677793 0.12764915 0.057777709 0.022624223 0.007151747 0.002988208 0.001179132 0.001140178 + +[Correct age distribution after household allocation to exactly match specified demography] +1 + +[Include places] +1 + +[Place overlap matrix] +1 0 0 +0 1 0 +0 0 1 + +[Number of types of places] +3 + +[Proportion of age group 1 in place types] +1 0.68 0 + +[Minimum age for age group 1 in place types] +6 18 0 + +[Maximum age for age group 1 in place types] +18 65 85 + +[Proportion of age group 2 in place types] +0.25 0.32 0 + +[Minimum age for age group 2 in place types] +5 65 0 + +[Maximum age for age group 2 in place types] +6 75 85 + +[Proportion of age group 3 in place types] +0.014 0 0.01 + +[Minimum age for age group 3 in place types] +20 21 0 + +[Maximum age for age group 3 in place types] +65 65 85 + +[Kernel type] +6 + +[Kernel scale] +35000 + +[Kernel Shape] +6 + +[Kernel type for place types] +5 6 2 + +[Kernel shape params for place types] +11 6.5 3 + +[Kernel scale params for place types] +14000 35000 4000 + +[Kernel 3rd param for place types] +0 0.0004 0 + +[Kernel 4th param for place types] +0 2.2 0 + +[Mean size of place types] +460 14.28 100 + +[Number of closest places people pick from (0=all) for place types] +10 0 0 + +[Param 1 of place group size distribution] +25 10 1000 + +[Power of place size distribution] +0 1.34 0 + +[Offset of place size distribution] +0 5.35 0 + +[Maximum of place size distribution] +0 5927 0 + +[Proportion of between group place links] +0.25 0.25 1 + +[Kernel resolution] +4000000 + +[Kernel higher resolution factor] +2500 + +[Include holidays] +0 + +[Proportion of places remaining open during holidays by place type] +0 0 1 1 + +[Number of holidays] +5 + +[Holiday start times] +23 78 127 176 234 + +[Holiday durations] +14 7 14 7 42 From 65f4d40fb0ac34705e8788ff675e5305d12fb6d4 Mon Sep 17 00:00:00 2001 From: Wes Hinsley Date: Wed, 24 Jun 2020 11:18:38 +0100 Subject: [PATCH 2/3] Move USA admin files to top-level admin folder --- data/admin_units/{USA => }/Alabama_admin.txt | 0 data/admin_units/{USA => }/Alaska_admin.txt | 0 data/admin_units/{USA => }/American_Samoa_admin.txt | 0 data/admin_units/{USA => }/Arizona_admin.txt | 0 data/admin_units/{USA => }/Arkansas_admin.txt | 0 data/admin_units/{USA => }/California_admin.txt | 0 data/admin_units/{USA => }/Colorado_admin.txt | 0 data/admin_units/{USA => }/Connecticut_admin.txt | 0 data/admin_units/{USA => }/Delaware_admin.txt | 0 data/admin_units/{USA => }/District_Of_Columbia_admin.txt | 0 data/admin_units/{USA => }/Florida_admin.txt | 0 data/admin_units/{USA => }/Georgia_admin.txt | 0 data/admin_units/{USA => }/Guam_admin.txt | 0 data/admin_units/{USA => }/Hawaii_admin.txt | 0 data/admin_units/{USA => }/Idaho_admin.txt | 0 data/admin_units/{USA => }/Illinois_admin.txt | 0 data/admin_units/{USA => }/Indiana_admin.txt | 0 data/admin_units/{USA => }/Iowa_admin.txt | 0 data/admin_units/{USA => }/Kansas_admin.txt | 0 data/admin_units/{USA => }/Kentucky_admin.txt | 0 data/admin_units/{USA => }/Louisiana_admin.txt | 0 data/admin_units/{USA => }/Maine_admin.txt | 0 data/admin_units/{USA => }/Maryland_admin.txt | 0 data/admin_units/{USA => }/Massachusetts_admin.txt | 0 data/admin_units/{USA => }/Michigan_admin.txt | 0 data/admin_units/{USA => }/Minnesota_admin.txt | 0 data/admin_units/{USA => }/Mississippi_admin.txt | 0 data/admin_units/{USA => }/Missouri_admin.txt | 0 data/admin_units/{USA => }/Montana_admin.txt | 0 data/admin_units/{USA => }/Nebraska_admin.txt | 0 data/admin_units/{USA => }/Nevada_admin.txt | 0 data/admin_units/{USA => }/New_Hampshire_admin.txt | 0 data/admin_units/{USA => }/New_Jersey_admin.txt | 0 data/admin_units/{USA => }/New_Mexico_admin.txt | 0 data/admin_units/{USA => }/New_York_admin.txt | 0 data/admin_units/{USA => }/North_Carolina_admin.txt | 0 data/admin_units/{USA => }/North_Dakota_admin.txt | 0 data/admin_units/{USA => }/Ohio_admin.txt | 0 data/admin_units/{USA => }/Oklahoma_admin.txt | 0 data/admin_units/{USA => }/Oregon_admin.txt | 0 data/admin_units/{USA => }/Pennsylvania_admin.txt | 0 data/admin_units/{USA => }/Puerto_Rico_admin.txt | 0 data/admin_units/{USA => }/Rhode_Island_admin.txt | 0 data/admin_units/{USA => }/South_Carolina_admin.txt | 0 data/admin_units/{USA => }/South_Dakota_admin.txt | 0 data/admin_units/{USA => }/Tennessee_admin.txt | 0 data/admin_units/{USA => }/Texas_admin.txt | 0 data/admin_units/{USA => }/Utah_admin.txt | 0 data/admin_units/{USA => }/Vermont_admin.txt | 0 data/admin_units/{USA => }/Virgin_Islands_US_admin.txt | 0 data/admin_units/{USA => }/Virginia_admin.txt | 0 data/admin_units/{USA => }/Washington_admin.txt | 0 data/admin_units/{USA => }/West_Virginia_admin.txt | 0 data/admin_units/{USA => }/Wisconsin_admin.txt | 0 data/admin_units/{USA => }/Wyoming_admin.txt | 0 55 files changed, 0 insertions(+), 0 deletions(-) rename data/admin_units/{USA => }/Alabama_admin.txt (100%) rename data/admin_units/{USA => }/Alaska_admin.txt (100%) rename data/admin_units/{USA => }/American_Samoa_admin.txt (100%) rename data/admin_units/{USA => }/Arizona_admin.txt (100%) rename data/admin_units/{USA => }/Arkansas_admin.txt (100%) rename data/admin_units/{USA => }/California_admin.txt (100%) rename data/admin_units/{USA => }/Colorado_admin.txt (100%) rename data/admin_units/{USA => }/Connecticut_admin.txt (100%) rename data/admin_units/{USA => }/Delaware_admin.txt (100%) rename data/admin_units/{USA => }/District_Of_Columbia_admin.txt (100%) rename data/admin_units/{USA => }/Florida_admin.txt (100%) rename data/admin_units/{USA => }/Georgia_admin.txt (100%) rename data/admin_units/{USA => }/Guam_admin.txt (100%) rename data/admin_units/{USA => }/Hawaii_admin.txt (100%) rename data/admin_units/{USA => }/Idaho_admin.txt (100%) rename data/admin_units/{USA => }/Illinois_admin.txt (100%) rename data/admin_units/{USA => }/Indiana_admin.txt (100%) rename data/admin_units/{USA => }/Iowa_admin.txt (100%) rename data/admin_units/{USA => }/Kansas_admin.txt (100%) rename data/admin_units/{USA => }/Kentucky_admin.txt (100%) rename data/admin_units/{USA => }/Louisiana_admin.txt (100%) rename data/admin_units/{USA => }/Maine_admin.txt (100%) rename data/admin_units/{USA => }/Maryland_admin.txt (100%) rename data/admin_units/{USA => }/Massachusetts_admin.txt (100%) rename data/admin_units/{USA => }/Michigan_admin.txt (100%) rename data/admin_units/{USA => }/Minnesota_admin.txt (100%) rename data/admin_units/{USA => }/Mississippi_admin.txt (100%) rename data/admin_units/{USA => }/Missouri_admin.txt (100%) rename data/admin_units/{USA => }/Montana_admin.txt (100%) rename data/admin_units/{USA => }/Nebraska_admin.txt (100%) rename data/admin_units/{USA => }/Nevada_admin.txt (100%) rename data/admin_units/{USA => }/New_Hampshire_admin.txt (100%) rename data/admin_units/{USA => }/New_Jersey_admin.txt (100%) rename data/admin_units/{USA => }/New_Mexico_admin.txt (100%) rename data/admin_units/{USA => }/New_York_admin.txt (100%) rename data/admin_units/{USA => }/North_Carolina_admin.txt (100%) rename data/admin_units/{USA => }/North_Dakota_admin.txt (100%) rename data/admin_units/{USA => }/Ohio_admin.txt (100%) rename data/admin_units/{USA => }/Oklahoma_admin.txt (100%) rename data/admin_units/{USA => }/Oregon_admin.txt (100%) rename data/admin_units/{USA => }/Pennsylvania_admin.txt (100%) rename data/admin_units/{USA => }/Puerto_Rico_admin.txt (100%) rename data/admin_units/{USA => }/Rhode_Island_admin.txt (100%) rename data/admin_units/{USA => }/South_Carolina_admin.txt (100%) rename data/admin_units/{USA => }/South_Dakota_admin.txt (100%) rename data/admin_units/{USA => }/Tennessee_admin.txt (100%) rename data/admin_units/{USA => }/Texas_admin.txt (100%) rename data/admin_units/{USA => }/Utah_admin.txt (100%) rename data/admin_units/{USA => }/Vermont_admin.txt (100%) rename data/admin_units/{USA => }/Virgin_Islands_US_admin.txt (100%) rename data/admin_units/{USA => }/Virginia_admin.txt (100%) rename data/admin_units/{USA => }/Washington_admin.txt (100%) rename data/admin_units/{USA => }/West_Virginia_admin.txt (100%) rename data/admin_units/{USA => }/Wisconsin_admin.txt (100%) rename data/admin_units/{USA => }/Wyoming_admin.txt (100%) diff --git a/data/admin_units/USA/Alabama_admin.txt b/data/admin_units/Alabama_admin.txt similarity index 100% rename from data/admin_units/USA/Alabama_admin.txt rename to data/admin_units/Alabama_admin.txt diff --git a/data/admin_units/USA/Alaska_admin.txt b/data/admin_units/Alaska_admin.txt similarity index 100% rename from data/admin_units/USA/Alaska_admin.txt rename to data/admin_units/Alaska_admin.txt diff --git a/data/admin_units/USA/American_Samoa_admin.txt b/data/admin_units/American_Samoa_admin.txt similarity index 100% rename from data/admin_units/USA/American_Samoa_admin.txt rename to data/admin_units/American_Samoa_admin.txt diff --git a/data/admin_units/USA/Arizona_admin.txt b/data/admin_units/Arizona_admin.txt similarity index 100% rename from data/admin_units/USA/Arizona_admin.txt rename to data/admin_units/Arizona_admin.txt diff --git a/data/admin_units/USA/Arkansas_admin.txt b/data/admin_units/Arkansas_admin.txt similarity index 100% rename from data/admin_units/USA/Arkansas_admin.txt rename to data/admin_units/Arkansas_admin.txt diff --git a/data/admin_units/USA/California_admin.txt b/data/admin_units/California_admin.txt similarity index 100% rename from data/admin_units/USA/California_admin.txt rename to data/admin_units/California_admin.txt diff --git a/data/admin_units/USA/Colorado_admin.txt b/data/admin_units/Colorado_admin.txt similarity index 100% rename from data/admin_units/USA/Colorado_admin.txt rename to data/admin_units/Colorado_admin.txt diff --git a/data/admin_units/USA/Connecticut_admin.txt b/data/admin_units/Connecticut_admin.txt similarity index 100% rename from data/admin_units/USA/Connecticut_admin.txt rename to data/admin_units/Connecticut_admin.txt diff --git a/data/admin_units/USA/Delaware_admin.txt b/data/admin_units/Delaware_admin.txt similarity index 100% rename from data/admin_units/USA/Delaware_admin.txt rename to data/admin_units/Delaware_admin.txt diff --git a/data/admin_units/USA/District_Of_Columbia_admin.txt b/data/admin_units/District_Of_Columbia_admin.txt similarity index 100% rename from data/admin_units/USA/District_Of_Columbia_admin.txt rename to data/admin_units/District_Of_Columbia_admin.txt diff --git a/data/admin_units/USA/Florida_admin.txt b/data/admin_units/Florida_admin.txt similarity index 100% rename from data/admin_units/USA/Florida_admin.txt rename to data/admin_units/Florida_admin.txt diff --git a/data/admin_units/USA/Georgia_admin.txt b/data/admin_units/Georgia_admin.txt similarity index 100% rename from data/admin_units/USA/Georgia_admin.txt rename to data/admin_units/Georgia_admin.txt diff --git a/data/admin_units/USA/Guam_admin.txt b/data/admin_units/Guam_admin.txt similarity index 100% rename from data/admin_units/USA/Guam_admin.txt rename to data/admin_units/Guam_admin.txt diff --git a/data/admin_units/USA/Hawaii_admin.txt b/data/admin_units/Hawaii_admin.txt similarity index 100% rename from data/admin_units/USA/Hawaii_admin.txt rename to data/admin_units/Hawaii_admin.txt diff --git a/data/admin_units/USA/Idaho_admin.txt b/data/admin_units/Idaho_admin.txt similarity index 100% rename from data/admin_units/USA/Idaho_admin.txt rename to data/admin_units/Idaho_admin.txt diff --git a/data/admin_units/USA/Illinois_admin.txt b/data/admin_units/Illinois_admin.txt similarity index 100% rename from data/admin_units/USA/Illinois_admin.txt rename to data/admin_units/Illinois_admin.txt diff --git a/data/admin_units/USA/Indiana_admin.txt b/data/admin_units/Indiana_admin.txt similarity index 100% rename from data/admin_units/USA/Indiana_admin.txt rename to data/admin_units/Indiana_admin.txt diff --git a/data/admin_units/USA/Iowa_admin.txt b/data/admin_units/Iowa_admin.txt similarity index 100% rename from data/admin_units/USA/Iowa_admin.txt rename to data/admin_units/Iowa_admin.txt diff --git a/data/admin_units/USA/Kansas_admin.txt b/data/admin_units/Kansas_admin.txt similarity index 100% rename from data/admin_units/USA/Kansas_admin.txt rename to data/admin_units/Kansas_admin.txt diff --git a/data/admin_units/USA/Kentucky_admin.txt b/data/admin_units/Kentucky_admin.txt similarity index 100% rename from data/admin_units/USA/Kentucky_admin.txt rename to data/admin_units/Kentucky_admin.txt diff --git a/data/admin_units/USA/Louisiana_admin.txt b/data/admin_units/Louisiana_admin.txt similarity index 100% rename from data/admin_units/USA/Louisiana_admin.txt rename to data/admin_units/Louisiana_admin.txt diff --git a/data/admin_units/USA/Maine_admin.txt b/data/admin_units/Maine_admin.txt similarity index 100% rename from data/admin_units/USA/Maine_admin.txt rename to data/admin_units/Maine_admin.txt diff --git a/data/admin_units/USA/Maryland_admin.txt b/data/admin_units/Maryland_admin.txt similarity index 100% rename from data/admin_units/USA/Maryland_admin.txt rename to data/admin_units/Maryland_admin.txt diff --git a/data/admin_units/USA/Massachusetts_admin.txt b/data/admin_units/Massachusetts_admin.txt similarity index 100% rename from data/admin_units/USA/Massachusetts_admin.txt rename to data/admin_units/Massachusetts_admin.txt diff --git a/data/admin_units/USA/Michigan_admin.txt b/data/admin_units/Michigan_admin.txt similarity index 100% rename from data/admin_units/USA/Michigan_admin.txt rename to data/admin_units/Michigan_admin.txt diff --git a/data/admin_units/USA/Minnesota_admin.txt b/data/admin_units/Minnesota_admin.txt similarity index 100% rename from data/admin_units/USA/Minnesota_admin.txt rename to data/admin_units/Minnesota_admin.txt diff --git a/data/admin_units/USA/Mississippi_admin.txt b/data/admin_units/Mississippi_admin.txt similarity index 100% rename from data/admin_units/USA/Mississippi_admin.txt rename to data/admin_units/Mississippi_admin.txt diff --git a/data/admin_units/USA/Missouri_admin.txt b/data/admin_units/Missouri_admin.txt similarity index 100% rename from data/admin_units/USA/Missouri_admin.txt rename to data/admin_units/Missouri_admin.txt diff --git a/data/admin_units/USA/Montana_admin.txt b/data/admin_units/Montana_admin.txt similarity index 100% rename from data/admin_units/USA/Montana_admin.txt rename to data/admin_units/Montana_admin.txt diff --git a/data/admin_units/USA/Nebraska_admin.txt b/data/admin_units/Nebraska_admin.txt similarity index 100% rename from data/admin_units/USA/Nebraska_admin.txt rename to data/admin_units/Nebraska_admin.txt diff --git a/data/admin_units/USA/Nevada_admin.txt b/data/admin_units/Nevada_admin.txt similarity index 100% rename from data/admin_units/USA/Nevada_admin.txt rename to data/admin_units/Nevada_admin.txt diff --git a/data/admin_units/USA/New_Hampshire_admin.txt b/data/admin_units/New_Hampshire_admin.txt similarity index 100% rename from data/admin_units/USA/New_Hampshire_admin.txt rename to data/admin_units/New_Hampshire_admin.txt diff --git a/data/admin_units/USA/New_Jersey_admin.txt b/data/admin_units/New_Jersey_admin.txt similarity index 100% rename from data/admin_units/USA/New_Jersey_admin.txt rename to data/admin_units/New_Jersey_admin.txt diff --git a/data/admin_units/USA/New_Mexico_admin.txt b/data/admin_units/New_Mexico_admin.txt similarity index 100% rename from data/admin_units/USA/New_Mexico_admin.txt rename to data/admin_units/New_Mexico_admin.txt diff --git a/data/admin_units/USA/New_York_admin.txt b/data/admin_units/New_York_admin.txt similarity index 100% rename from data/admin_units/USA/New_York_admin.txt rename to data/admin_units/New_York_admin.txt diff --git a/data/admin_units/USA/North_Carolina_admin.txt b/data/admin_units/North_Carolina_admin.txt similarity index 100% rename from data/admin_units/USA/North_Carolina_admin.txt rename to data/admin_units/North_Carolina_admin.txt diff --git a/data/admin_units/USA/North_Dakota_admin.txt b/data/admin_units/North_Dakota_admin.txt similarity index 100% rename from data/admin_units/USA/North_Dakota_admin.txt rename to data/admin_units/North_Dakota_admin.txt diff --git a/data/admin_units/USA/Ohio_admin.txt b/data/admin_units/Ohio_admin.txt similarity index 100% rename from data/admin_units/USA/Ohio_admin.txt rename to data/admin_units/Ohio_admin.txt diff --git a/data/admin_units/USA/Oklahoma_admin.txt b/data/admin_units/Oklahoma_admin.txt similarity index 100% rename from data/admin_units/USA/Oklahoma_admin.txt rename to data/admin_units/Oklahoma_admin.txt diff --git a/data/admin_units/USA/Oregon_admin.txt b/data/admin_units/Oregon_admin.txt similarity index 100% rename from data/admin_units/USA/Oregon_admin.txt rename to data/admin_units/Oregon_admin.txt diff --git a/data/admin_units/USA/Pennsylvania_admin.txt b/data/admin_units/Pennsylvania_admin.txt similarity index 100% rename from data/admin_units/USA/Pennsylvania_admin.txt rename to data/admin_units/Pennsylvania_admin.txt diff --git a/data/admin_units/USA/Puerto_Rico_admin.txt b/data/admin_units/Puerto_Rico_admin.txt similarity index 100% rename from data/admin_units/USA/Puerto_Rico_admin.txt rename to data/admin_units/Puerto_Rico_admin.txt diff --git a/data/admin_units/USA/Rhode_Island_admin.txt b/data/admin_units/Rhode_Island_admin.txt similarity index 100% rename from data/admin_units/USA/Rhode_Island_admin.txt rename to data/admin_units/Rhode_Island_admin.txt diff --git a/data/admin_units/USA/South_Carolina_admin.txt b/data/admin_units/South_Carolina_admin.txt similarity index 100% rename from data/admin_units/USA/South_Carolina_admin.txt rename to data/admin_units/South_Carolina_admin.txt diff --git a/data/admin_units/USA/South_Dakota_admin.txt b/data/admin_units/South_Dakota_admin.txt similarity index 100% rename from data/admin_units/USA/South_Dakota_admin.txt rename to data/admin_units/South_Dakota_admin.txt diff --git a/data/admin_units/USA/Tennessee_admin.txt b/data/admin_units/Tennessee_admin.txt similarity index 100% rename from data/admin_units/USA/Tennessee_admin.txt rename to data/admin_units/Tennessee_admin.txt diff --git a/data/admin_units/USA/Texas_admin.txt b/data/admin_units/Texas_admin.txt similarity index 100% rename from data/admin_units/USA/Texas_admin.txt rename to data/admin_units/Texas_admin.txt diff --git a/data/admin_units/USA/Utah_admin.txt b/data/admin_units/Utah_admin.txt similarity index 100% rename from data/admin_units/USA/Utah_admin.txt rename to data/admin_units/Utah_admin.txt diff --git a/data/admin_units/USA/Vermont_admin.txt b/data/admin_units/Vermont_admin.txt similarity index 100% rename from data/admin_units/USA/Vermont_admin.txt rename to data/admin_units/Vermont_admin.txt diff --git a/data/admin_units/USA/Virgin_Islands_US_admin.txt b/data/admin_units/Virgin_Islands_US_admin.txt similarity index 100% rename from data/admin_units/USA/Virgin_Islands_US_admin.txt rename to data/admin_units/Virgin_Islands_US_admin.txt diff --git a/data/admin_units/USA/Virginia_admin.txt b/data/admin_units/Virginia_admin.txt similarity index 100% rename from data/admin_units/USA/Virginia_admin.txt rename to data/admin_units/Virginia_admin.txt diff --git a/data/admin_units/USA/Washington_admin.txt b/data/admin_units/Washington_admin.txt similarity index 100% rename from data/admin_units/USA/Washington_admin.txt rename to data/admin_units/Washington_admin.txt diff --git a/data/admin_units/USA/West_Virginia_admin.txt b/data/admin_units/West_Virginia_admin.txt similarity index 100% rename from data/admin_units/USA/West_Virginia_admin.txt rename to data/admin_units/West_Virginia_admin.txt diff --git a/data/admin_units/USA/Wisconsin_admin.txt b/data/admin_units/Wisconsin_admin.txt similarity index 100% rename from data/admin_units/USA/Wisconsin_admin.txt rename to data/admin_units/Wisconsin_admin.txt diff --git a/data/admin_units/USA/Wyoming_admin.txt b/data/admin_units/Wyoming_admin.txt similarity index 100% rename from data/admin_units/USA/Wyoming_admin.txt rename to data/admin_units/Wyoming_admin.txt From 0c2eec2cb1f658093913ec2cc507ce7e4e5b6842 Mon Sep 17 00:00:00 2001 From: Matthew Gretton-Dann Date: Wed, 24 Jun 2020 17:04:31 +0100 Subject: [PATCH 3/3] Update run_sample.py to understand USA Sates --- data/run_sample.py | 27 +++++++++++++++++++++------ 1 file changed, 21 insertions(+), 6 deletions(-) diff --git a/data/run_sample.py b/data/run_sample.py index e0b4371a7..31d50965d 100755 --- a/data/run_sample.py +++ b/data/run_sample.py @@ -80,9 +80,24 @@ def parse_args(): args = parse_args() # Lists of places that need to be handled specially -united_states = [ "United_States" ] +usa_contiguous = [ + "United_States", + "Alabama", "Arizona", "Arkansas", "California", "Colorado", + "Connecticut", "Delaware", "District_Of_Columbia", "Florida", + "Georgia", "Idaho", "Illinois", "Indiana", "Iowa", "Kansas", + "Kentucky", "Louisiana", "Maine", "Maryland", "Massachusetts", + "Michigan", "Minnesota", "Mississippi", "Missouri", "Montana", + "Nebraska", "Nevada", "New_Hampshire", "New_Jersey", "New_Mexico", + "New_York", "North_Carolina", "North_Dakota", "Ohio", "Oklahoma", + "Oregon", "Pennsylvania", "Rhode_Island", "South_Carolina", + "South_Dakota", "Tennessee", "Texas", "Utah", "Vermont", "Virginia", + "Washington", "West_Virginia", "Wisconsin", "Wyoming" + ] canada = [ "Canada" ] -usa_territories = ["Alaska", "Hawaii", "Guam", "Virgin_Islands_US", "Puerto_Rico", "American_Samoa"] +usa_non_contiguous = [ + "Alaska", "American_Samoa", "Guam", "Hawaii", "Puerto_Rico", + "Virgin_Islands_US" + ] nigeria = ["Nigeria"] # Determine whether we need to build the tool or use a user supplied one: @@ -124,9 +139,9 @@ def parse_args(): # Population density file in gziped form, text file, and binary file as # processed by CovidSim -if args.country in united_states + canada: +if args.country in usa_contiguous + canada: wpop_file_root = "usacan" -elif args.country in usa_territories: +elif args.country in usa_non_contiguous: wpop_file_root = "us_terr" elif args.country in nigeria: wpop_file_root = "nga_adm1" @@ -158,7 +173,7 @@ def parse_args(): shutil.copyfileobj(f_in, f_out) # Configure pre-parameter file. This file doesn't change between runs: -if args.country in united_states: +if args.country in usa_contiguous: pp_file = os.path.join(args.paramdir, "preUS_R0=2.0.txt") elif args.country in nigeria: pp_file = os.path.join(args.paramdir, "preNGA_R0=2.0.txt") @@ -192,7 +207,7 @@ def parse_args(): exit(1) school_file = None -if args.country in united_states: +if args.country in usa_contiguous: school_file = os.path.join(args.datadir, "populations", "USschools.txt") if not os.path.exists(school_file):