proteinfamilies/modules.json at main · nf-core/proteinfamilies · GitHub

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{
    "name": "nf-core/proteinfamilies",
    "homePage": "https://github.com/nf-core/proteinfamilies",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "clipkit": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    },
                    "cmaple": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    },
                    "famsa/align": {
                        "branch": "master",
                        "git_sha": "3e3c4b8c6ed921a2d0409c988815d34ed6012ba9",
                        "installed_by": ["modules"]
                    },
                    "find/concatenate": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    },
                    "hhsuite/reformat": {
                        "branch": "master",
                        "git_sha": "0a0d038765a622ae970b3eb08c6fa0be48c7d24d",
                        "installed_by": ["modules"]
                    },
                    "hmmer/hmmalign": {
                        "branch": "master",
                        "git_sha": "f2bed902e13076698e7d59d1fedf5c083f6f17c0",
                        "installed_by": ["modules"]
                    },
                    "hmmer/hmmbuild": {
                        "branch": "master",
                        "git_sha": "f2bed902e13076698e7d59d1fedf5c083f6f17c0",
                        "installed_by": ["modules"]
                    },
                    "hmmer/hmmsearch": {
                        "branch": "master",
                        "git_sha": "f2bed902e13076698e7d59d1fedf5c083f6f17c0",
                        "installed_by": ["modules"]
                    },
                    "mafft/align": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    },
                    "mmseqs/cluster": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["mmseqs_fasta_cluster"],
                        "patch": "modules/nf-core/mmseqs/cluster/mmseqs-cluster.diff"
                    },
                    "mmseqs/createdb": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["mmseqs_fasta_cluster"]
                    },
                    "mmseqs/createtsv": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["mmseqs_fasta_cluster"]
                    },
                    "mmseqs/linclust": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["mmseqs_fasta_cluster"],
                        "patch": "modules/nf-core/mmseqs/linclust/mmseqs-linclust.diff"
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "98403d15b0e50edae1f3fec5eae5e24982f1fade",
                        "installed_by": ["modules"]
                    },
                    "seqfu/stats": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "seqkit/replace": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "seqkit/rmdup": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "seqkit/seq": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "untar": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "faa_seqfu_seqkit": {
                        "branch": "master",
                        "git_sha": "bf70cbf44b42ff4a81afcb673fcef604f5ef3a85",
                        "installed_by": ["subworkflows"]
                    },
                    "mmseqs_fasta_cluster": {
                        "branch": "master",
                        "git_sha": "9ef13474c5ed9a2d740b0b8565209be636361b5a",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "1a545fcbd762911c21a64ced3dbef99b2b51ac75",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}