diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c41543b..39a5230 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -3,8 +3,8 @@
 # pre-commit install -t pre-commit -t pre-push
 
 repos:
-  - repo: https://github.com/psf/black
-    rev: 24.4.2
+  - repo: https://github.com/psf/black-pre-commit-mirror
+    rev: 26.5.1
     hooks:
       - id: black
   - repo: https://github.com/asottile/pyupgrade
@@ -17,7 +17,7 @@ repos:
       - id: prettier
         exclude: centos_playground/pkg_survey/result*
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v6.0.0
     hooks:
       # - id: check-added-large-files  # this is a research repo, we can have big files here
       - id: check-ast
@@ -28,7 +28,7 @@ repos:
       - id: end-of-file-fixer
       - id: trailing-whitespace
   - repo: https://github.com/PyCQA/flake8
-    rev: 7.1.0
+    rev: 7.3.0
     hooks:
       - id: flake8
         args:
@@ -40,9 +40,9 @@ repos:
   #      - id: mypy
   #        args: [--no-strict-optional, --ignore-missing-imports]
   - repo: https://github.com/packit/pre-commit-hooks
-    rev: v1.2.0
+    rev: v1.3.0
     hooks:
       - id: check-rebase
         args:
           - https://github.com/packit/research.git
-        stages: [manual, push]
+        stages: [manual, pre-push]
diff --git a/research/fedora-packages-onboarding/get-maintainers.py b/research/fedora-packages-onboarding/get-maintainers.py
index 213a469..a85ad2c 100755
--- a/research/fedora-packages-onboarding/get-maintainers.py
+++ b/research/fedora-packages-onboarding/get-maintainers.py
@@ -14,7 +14,6 @@
 from ogr.services.pagure import PagureProject
 from specfile import Specfile
 
-
 bodhi_client = BodhiClient()
 RPM_SPECS = Path("./rpm-specs")
 checks = []
diff --git a/research/internal-automation/onboard/generate_input.py b/research/internal-automation/onboard/generate_input.py
index 1479728..28f7b1e 100644
--- a/research/internal-automation/onboard/generate_input.py
+++ b/research/internal-automation/onboard/generate_input.py
@@ -1,6 +1,5 @@
 from onboard.upstream_finder import UpstreamFinder
 
-
 if __name__ == "__main__":
     with open("downstream_packages") as dpf:
         downstream_names = dpf.read().splitlines()
diff --git a/research/source-git/fedora-spec-files/generate-data.py b/research/source-git/fedora-spec-files/generate-data.py
index 799d462..7d4c45f 100755
--- a/research/source-git/fedora-spec-files/generate-data.py
+++ b/research/source-git/fedora-spec-files/generate-data.py
@@ -1,5 +1,6 @@
 #!/usr/bin/python3
-""" Generate %patch, %source and %prep data about most patched Fedora spec files. """
+"""Generate %patch, %source and %prep data about most patched Fedora spec files."""
+
 import json
 import pathlib
 import re
diff --git a/research/specfiles/hosting-sources/process.py b/research/specfiles/hosting-sources/process.py
index fa1b7a1..343f4b8 100644
--- a/research/specfiles/hosting-sources/process.py
+++ b/research/specfiles/hosting-sources/process.py
@@ -5,7 +5,6 @@
 
 import click
 
-
 IGNORED_PROTOCOLS = {
     "",  # None → local files from lookaside cache
     "file",  # same as previous