diff --git a/src/bacteria_docdyn.F90 b/src/bacteria_docdyn.F90 index d031ec0..5c70b55 100644 --- a/src/bacteria_docdyn.F90 +++ b/src/bacteria_docdyn.F90 @@ -43,7 +43,7 @@ module ersem_bacteria_docdyn real(rk) :: DeniX,reoX,omroX,omonX,chN3oX integer :: denit - ! Remineralization + ! Remineralisation real(rk) :: sR1N1X,sR1N4X real(rk) :: fsinkX contains @@ -98,12 +98,12 @@ subroutine initialize(self,configunit) call self%register_state_dependency(self%id_N3n,'N3n','mmol N/m^3','nitrate') call self%register_state_dependency(self%id_N6,'N6','mmol HS-/m^3','reduction equivalent') - call self%register_diagnostic_variable(self%id_fdenit,'fdenit','mmol N/m^3/d','denitrification', missing_value=0._rk) - call self%register_diagnostic_variable(self%id_fanox,'fanox', '-', 'fanox', missing_value=0._rk) - call self%register_diagnostic_variable(self%id_freox,'freox', '-', 'freox', missing_value=0._rk) + call self%register_diagnostic_variable(self%id_fdenit, 'fdenit', 'mmol N/m^3/d', 'denitrification', missing_value=0._rk) + call self%register_diagnostic_variable(self%id_fanox, 'fanox', 'mmol HS-/m^3/d', 'formation of reduction equivalents', missing_value=0._rk) + call self%register_diagnostic_variable(self%id_freox, 'freox','mmol HS-/m^3/d', 'reoxidation of reduction equivalents', missing_value=0._rk) end if - ! Remineralization parameters + ! Remineralisation parameters call self%get_parameter(self%sR1N1X, 'sR1N1', '1/d', 'mineralisation rate of labile dissolved organic phosphorus') call self%get_parameter(self%sR1N4X, 'sR1N4', '1/d', 'mineralisation rate of labile dissolved organic nitrogen') call self%get_parameter(self%fsinkX, 'fsink', '1/d', 'scavenging rate for iron') @@ -322,7 +322,7 @@ subroutine do(self,_ARGUMENTS_DO_) fB1R3c=self%frB1R3*rraB1 fB1RDc = fB1R1c + fB1R2c + fB1R3c -! Denitrification implemented as in Sankar et al. (2008), doi.org/10.1016/j.ecolmodel.2018.01.016 +! Denitrification implemented as in Sankar et al. (2018), doi.org/10.1016/j.ecolmodel.2018.01.016 if (self%denit == 1) then denitpot = self%DeniX * N3n !eq.6 deniteff = max(0._rk, self%urB1_O2X * (1._rk-o2state) * fB1O3c / self%omonX) !eq.7 @@ -331,12 +331,12 @@ subroutine do(self,_ARGUMENTS_DO_) _SET_DIAGNOSTIC_(self%id_fdenit,fdenit) _SET_ODE_(self%id_N3n, -fdenit) -! Reduced sulfur formation corresponds to eq.9 in Sankar et al. (2008) +! Reduced sulfur formation corresponds to eq.9 in Sankar et al. (2018) fanox = self%omroX * (self%urB1_O2X * (1._rk-o2state) * fB1O3c - self%omonX * fdenit) freox = self%reoX * etB1 * o2state * N6 - _SET_DIAGNOSTIC_(self%id_fanox,freox) - _SET_DIAGNOSTIC_(self%id_freox,fanox) + _SET_DIAGNOSTIC_(self%id_fanox,fanox) + _SET_DIAGNOSTIC_(self%id_freox,freox) _SET_ODE_(self%id_N6, fanox - freox) end if @@ -497,7 +497,7 @@ subroutine remineralization(self,_ARGUMENTS_DO_) _SET_DIAGNOSTIC_(self%id_minp,fR1N1p) if (use_iron) then - ! remineralization of particulate iron to Fe + ! remineralisation of particulate iron to Fe do iRP=1,self%nRP _GET_(self%id_RPf(iRP),RPfP(iRP)) end do