diff --git a/Cargo.lock b/Cargo.lock index a9b2c0c..a8c03db 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -13,9 +13,9 @@ dependencies = [ [[package]] name = "adler2" -version = "2.0.0" +version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "512761e0bb2578dd7380c6baaa0f4ce03e84f95e960231d1dec8bf4d7d6e2627" +checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa" [[package]] name = "aho-corasick" @@ -26,12 +26,6 @@ dependencies = [ "memchr", ] -[[package]] -name = "android-tzdata" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" - [[package]] name = "android_system_properties" version = "0.1.5" @@ -52,9 +46,9 @@ dependencies = [ [[package]] name = "anstream" -version = "0.6.18" +version = "0.6.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8acc5369981196006228e28809f761875c0327210a891e941f4c683b3a99529b" +checksum = "3ae563653d1938f79b1ab1b5e668c87c76a9930414574a6583a7b7e11a8e6192" dependencies = [ "anstyle", "anstyle-parse", @@ -67,44 +61,44 @@ dependencies = [ [[package]] name = "anstyle" -version = "1.0.10" +version = "1.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9" +checksum = "862ed96ca487e809f1c8e5a8447f6ee2cf102f846893800b20cebdf541fc6bbd" [[package]] name = "anstyle-parse" -version = "0.2.6" +version = "0.2.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9" +checksum = "4e7644824f0aa2c7b9384579234ef10eb7efb6a0deb83f9630a49594dd9c15c2" dependencies = [ "utf8parse", ] [[package]] name = "anstyle-query" -version = "1.1.2" +version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c" +checksum = "9e231f6134f61b71076a3eab506c379d4f36122f2af15a9ff04415ea4c3339e2" dependencies = [ - "windows-sys 0.59.0", + "windows-sys 0.60.2", ] [[package]] name = "anstyle-wincon" -version = "3.0.7" +version = "3.0.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca3534e77181a9cc07539ad51f2141fe32f6c3ffd4df76db8ad92346b003ae4e" +checksum = "3e0633414522a32ffaac8ac6cc8f748e090c5717661fddeea04219e2344f5f2a" dependencies = [ "anstyle", - "once_cell", - "windows-sys 0.59.0", + "once_cell_polyfill", + "windows-sys 0.60.2", ] [[package]] name = "anyhow" -version = "1.0.98" +version = "1.0.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e16d2d3311acee920a9eb8d33b8cbc1787ce4a264e85f964c2404b969bdcd487" +checksum = "b0674a1ddeecb70197781e945de4b3b8ffb61fa939a5597bcf48503737663100" dependencies = [ "backtrace", ] @@ -117,15 +111,15 @@ checksum = "d92bec98840b8f03a5ff5413de5293bfcd8bf96467cf5452609f939ec6f5de16" [[package]] name = "autocfg" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26" +checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8" [[package]] name = "backtrace" -version = "0.3.74" +version = "0.3.75" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8d82cb332cdfaed17ae235a638438ac4d4839913cc2af585c3c6746e8f8bee1a" +checksum = "6806a6321ec58106fea15becdad98371e28d92ccbc7c8f1b3b6dd724fe8f1002" dependencies = [ "addr2line", "cfg-if", @@ -138,15 +132,15 @@ dependencies = [ [[package]] name = "bitflags" -version = "2.9.0" +version = "2.9.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5c8214115b7bf84099f1309324e63141d4c5d7cc26862f97a0a857dbefe165bd" +checksum = "2261d10cca569e4643e526d8dc2e62e433cc8aba21ab764233731f8d369bf394" [[package]] name = "bumpalo" -version = "3.17.0" +version = "3.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1628fb46dfa0b37568d12e5edd512553eccf6a22a78e8bde00bb4aed84d5bdbf" +checksum = "46c5e41b57b8bba42a04676d81cb89e9ee8e859a1a66f80a5a72e1cb76b34d43" [[package]] name = "cantata" @@ -160,34 +154,34 @@ dependencies = [ "nml2", "serde", "serde_json", - "thiserror 2.0.12", + "thiserror 2.0.16", ] [[package]] name = "cc" -version = "1.2.20" +version = "1.2.37" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "04da6a0d40b948dfc4fa8f5bbf402b0fc1a64a28dbf7d12ffd683550f2c1b63a" +checksum = "65193589c6404eb80b450d618eaf9a2cafaaafd57ecce47370519ef674a7bd44" dependencies = [ + "find-msvc-tools", "shlex", ] [[package]] name = "cfg-if" -version = "1.0.0" +version = "1.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" +checksum = "2fd1289c04a9ea8cb22300a459a72a385d7c73d3259e2ed7dcb2af674838cfa9" [[package]] name = "chrono" -version = "0.4.40" +version = "0.4.42" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1a7964611d71df112cb1730f2ee67324fcf4d0fc6606acbbe9bfe06df124637c" +checksum = "145052bdd345b87320e369255277e3fb5152762ad123a901ef5c262dd38fe8d2" dependencies = [ - "android-tzdata", "iana-time-zone", "num-traits", - "windows-link", + "windows-link 0.2.0", ] [[package]] @@ -219,9 +213,9 @@ dependencies = [ [[package]] name = "clap" -version = "4.5.37" +version = "4.5.47" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eccb054f56cbd38340b380d4a8e69ef1f02f1af43db2f0cc817a4774d80ae071" +checksum = "7eac00902d9d136acd712710d71823fb8ac8004ca445a89e73a41d45aa712931" dependencies = [ "clap_builder", "clap_derive", @@ -229,9 +223,9 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.5.37" +version = "4.5.47" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "efd9466fac8543255d3b1fcad4762c5e116ffe808c8a3043d4263cd4fd4862a2" +checksum = "2ad9bbf750e73b5884fb8a211a9424a1906c1e156724260fdae972f31d70e1d6" dependencies = [ "anstream", "anstyle", @@ -241,9 +235,9 @@ dependencies = [ [[package]] name = "clap_derive" -version = "4.5.32" +version = "4.5.47" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09176aae279615badda0765c0c0b3f6ed53f4709118af73cf4655d85d1530cd7" +checksum = "bbfd7eae0b0f1a6e63d4b13c9c478de77c2eb546fba158ad50b4203dc24b9f9c" dependencies = [ "heck", "proc-macro2", @@ -253,15 +247,15 @@ dependencies = [ [[package]] name = "clap_lex" -version = "0.7.4" +version = "0.7.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6" +checksum = "b94f61472cee1439c0b966b47e3aca9ae07e45d070759512cd390ea2bebc6675" [[package]] name = "colorchoice" -version = "1.0.3" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990" +checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75" [[package]] name = "core-foundation-sys" @@ -271,9 +265,9 @@ checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b" [[package]] name = "crunchy" -version = "0.2.3" +version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "43da5946c66ffcc7745f48db692ffbb10a83bfe0afd96235c5c2a4fb23994929" +checksum = "460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5" [[package]] name = "csv" @@ -302,6 +296,12 @@ version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f" +[[package]] +name = "find-msvc-tools" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7fd99930f64d146689264c637b5af2f0233a933bef0d8570e2526bf9e083192d" + [[package]] name = "gimli" version = "0.31.1" @@ -320,9 +320,9 @@ dependencies = [ [[package]] name = "hashbrown" -version = "0.15.2" +version = "0.15.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289" +checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1" [[package]] name = "hdf5-metno" @@ -390,9 +390,9 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea" [[package]] name = "iana-time-zone" -version = "0.1.63" +version = "0.1.64" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b0c919e5debc312ad217002b8048a17b7d83f80703865bbfcfebb0458b0b27d8" +checksum = "33e57f83510bb73707521ebaffa789ec8caf86f9657cad665b092b581d40e9fb" dependencies = [ "android_system_properties", "core-foundation-sys", @@ -414,9 +414,9 @@ dependencies = [ [[package]] name = "indexmap" -version = "2.9.0" +version = "2.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cea70ddb795996207ad57735b50c5982d8844f38ba9ee5f1aedcfb708a2aa11e" +checksum = "206a8042aec68fa4a62e8d3f7aa4ceb508177d9324faf261e1959e495b7a1921" dependencies = [ "equivalent", "hashbrown", @@ -436,9 +436,9 @@ checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c" [[package]] name = "js-sys" -version = "0.3.77" +version = "0.3.78" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f" +checksum = "0c0b063578492ceec17683ef2f8c5e89121fbd0b172cbc280635ab7567db2738" dependencies = [ "once_cell", "wasm-bindgen", @@ -452,25 +452,25 @@ checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" [[package]] name = "libc" -version = "0.2.172" +version = "0.2.175" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d750af042f7ef4f724306de029d18836c26c1765a54a6a3f094cbd23a7267ffa" +checksum = "6a82ae493e598baaea5209805c49bbf2ea7de956d50d7da0da1164f9c6d28543" [[package]] name = "libloading" -version = "0.8.6" +version = "0.8.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fc2f4eb4bc735547cfed7c0a4922cbd04a4655978c09b54f1f7b228750664c34" +checksum = "07033963ba89ebaf1584d767badaa2e8fcec21aedea6b8c0346d487d49c28667" dependencies = [ "cfg-if", - "windows-targets 0.52.6", + "windows-targets 0.53.3", ] [[package]] name = "lock_api" -version = "0.4.12" +version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17" +checksum = "96936507f153605bddfcda068dd804796c84324ed2510809e5b2a624c81da765" dependencies = [ "autocfg", "scopeguard", @@ -478,9 +478,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.27" +version = "0.4.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94" +checksum = "34080505efa8e45a4b816c349525ebe327ceaa8559756f0356cba97ef3bf7432" [[package]] name = "matchers" @@ -493,9 +493,9 @@ dependencies = [ [[package]] name = "matrixmultiply" -version = "0.3.9" +version = "0.3.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9380b911e3e96d10c1f415da0876389aaf1b56759054eeb0de7df940c456ba1a" +checksum = "a06de3016e9fae57a36fd14dba131fccf49f74b40b7fbdb472f96e361ec71a08" dependencies = [ "autocfg", "rawpointer", @@ -503,9 +503,9 @@ dependencies = [ [[package]] name = "memchr" -version = "2.7.4" +version = "2.7.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3" +checksum = "32a282da65faaf38286cf3be983213fcf1d2e2a58700e808f83f4ea9a4804bc0" [[package]] name = "minimal-lexical" @@ -515,9 +515,9 @@ checksum = "68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a" [[package]] name = "miniz_oxide" -version = "0.8.8" +version = "0.8.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3be647b768db090acb35d5ec5db2b0e1f1de11133ca123b9eacf5137868f892a" +checksum = "1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316" dependencies = [ "adler2", ] @@ -606,11 +606,17 @@ version = "1.21.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d" +[[package]] +name = "once_cell_polyfill" +version = "1.70.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a4895175b425cb1f87721b59f0f286c2092bd4af812243672510e1ac53e2e0ad" + [[package]] name = "parking_lot" -version = "0.12.3" +version = "0.12.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" +checksum = "70d58bf43669b5795d1576d0641cfb6fbb2057bf629506267a92807158584a13" dependencies = [ "lock_api", "parking_lot_core", @@ -618,9 +624,9 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.10" +version = "0.9.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8" +checksum = "bc838d2a56b5b1a6c25f55575dfc605fabb63bb2365f6c2353ef9159aa69e4a5" dependencies = [ "cfg-if", "libc", @@ -649,9 +655,9 @@ checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c" [[package]] name = "portable-atomic" -version = "1.11.0" +version = "1.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "350e9b48cbc6b0e028b0473b114454c6316e57336ee184ceab6e53f72c178b3e" +checksum = "f84267b20a16ea918e43c6a88433c2d54fa145c92a811b5b047ccbe153674483" [[package]] name = "portable-atomic-util" @@ -694,9 +700,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.95" +version = "1.0.101" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "02b3e5e68a3a1a02aad3ec490a98007cbc13c37cbe84a3cd7b8e406d76e7f778" +checksum = "89ae43fd86e4158d6db51ad8e2b80f313af9cc74f5c0e03ccb87de09998732de" dependencies = [ "unicode-ident", ] @@ -718,23 +724,23 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" [[package]] name = "redox_syscall" -version = "0.5.11" +version = "0.5.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d2f103c6d277498fbceb16e84d317e2a400f160f46904d5f5410848c829511a3" +checksum = "5407465600fb0548f1442edf71dd20683c6ed326200ace4b1ef0763521bb3b77" dependencies = [ "bitflags", ] [[package]] name = "regex" -version = "1.11.1" +version = "1.11.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191" +checksum = "23d7fd106d8c02486a8d64e778353d1cffe08ce79ac2e82f540c86d0facf6912" dependencies = [ "aho-corasick", "memchr", - "regex-automata 0.4.9", - "regex-syntax 0.8.5", + "regex-automata 0.4.10", + "regex-syntax 0.8.6", ] [[package]] @@ -748,13 +754,13 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.4.9" +version = "0.4.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908" +checksum = "6b9458fa0bfeeac22b5ca447c63aaf45f28439a709ccd244698632f9aa6394d6" dependencies = [ "aho-corasick", "memchr", - "regex-syntax 0.8.5", + "regex-syntax 0.8.6", ] [[package]] @@ -765,9 +771,9 @@ checksum = "f162c6dd7b008981e4d40210aca20b4bd0f9b60ca9271061b07f78537722f2e1" [[package]] name = "regex-syntax" -version = "0.8.5" +version = "0.8.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c" +checksum = "caf4aa5b0f434c91fe5c7f1ecb6a5ece2130b02ad2a590589dda5146df959001" [[package]] name = "roxmltree" @@ -777,15 +783,15 @@ checksum = "6c20b6793b5c2fa6553b250154b78d6d0db37e72700ae35fad9387a46f487c97" [[package]] name = "rustc-demangle" -version = "0.1.24" +version = "0.1.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f" +checksum = "56f7d92ca342cea22a06f2121d944b4fd82af56988c270852495420f961d4ace" [[package]] name = "rustversion" -version = "1.0.20" +version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eded382c5f5f786b989652c49544c4877d9f015cc22e145a5ea8ea66c2921cd2" +checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d" [[package]] name = "ryu" @@ -821,9 +827,9 @@ dependencies = [ [[package]] name = "serde_json" -version = "1.0.140" +version = "1.0.143" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "20068b6e96dc6c9bd23e01df8827e6c7e1f2fddd43c21810382803c136b99373" +checksum = "d401abef1d108fbd9cbaebc3e46611f4b1021f714a0597a71f41ee463f5f4a5a" dependencies = [ "itoa", "memchr", @@ -848,9 +854,9 @@ checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64" [[package]] name = "smallvec" -version = "1.15.0" +version = "1.15.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8917285742e9f3e1683f0a9c4e6b57960b7314d0b08d30d1ecd426713ee2eee9" +checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03" [[package]] name = "strsim" @@ -860,9 +866,9 @@ checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f" [[package]] name = "syn" -version = "2.0.101" +version = "2.0.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ce2b7fc941b3a24138a0a7cf8e858bfc6a992e7978a068a5c760deb0ed43caf" +checksum = "ede7c438028d4436d71104916910f5bb611972c5cfd7f89b8300a8186e6fada6" dependencies = [ "proc-macro2", "quote", @@ -880,11 +886,11 @@ dependencies = [ [[package]] name = "thiserror" -version = "2.0.12" +version = "2.0.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "567b8a2dae586314f7be2a752ec7474332959c6460e02bde30d702a66d488708" +checksum = "3467d614147380f2e4e374161426ff399c91084acd2363eaf549172b3d5e60c0" dependencies = [ - "thiserror-impl 2.0.12", + "thiserror-impl 2.0.16", ] [[package]] @@ -900,9 +906,9 @@ dependencies = [ [[package]] name = "thiserror-impl" -version = "2.0.12" +version = "2.0.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7f7cf42b4507d8ea322120659672cf1b9dbb93f8f2d4ecfd6e51350ff5b17a1d" +checksum = "6c5e1be1c48b9172ee610da68fd9cd2770e7a4056cb3fc98710ee6906f0c7960" dependencies = [ "proc-macro2", "quote", @@ -911,25 +917,24 @@ dependencies = [ [[package]] name = "thread_local" -version = "1.1.8" +version = "1.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8b9ef9bad013ada3808854ceac7b46812a6465ba368859a37e2100283d2d719c" +checksum = "f60246a4944f24f6e018aa17cdeffb7818b76356965d03b07d6a9886e8962185" dependencies = [ "cfg-if", - "once_cell", ] [[package]] name = "toml_datetime" -version = "0.6.9" +version = "0.6.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3da5db5a963e24bc68be8b17b6fa82814bb22ee8660f192bb182771d498f09a3" +checksum = "22cddaf88f4fbc13c51aebbf5f8eceb5c7c5a9da2ac40a13519eb5b0a0e8f11c" [[package]] name = "toml_edit" -version = "0.22.25" +version = "0.22.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "10558ed0bd2a1562e630926a2d1f0b98c827da99fabd3fe20920a59642504485" +checksum = "41fe8c660ae4257887cf66394862d21dbca4a6ddd26f04a3560410406a2f819a" dependencies = [ "indexmap", "toml_datetime", @@ -949,9 +954,9 @@ dependencies = [ [[package]] name = "tracing-attributes" -version = "0.1.28" +version = "0.1.30" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "395ae124c09f9e6918a2310af6038fba074bcf474ac352496d5910dd59a2226d" +checksum = "81383ab64e72a7a8b8e13130c49e3dab29def6d0c7d76a03087b3cf71c5c6903" dependencies = [ "proc-macro2", "quote", @@ -960,9 +965,9 @@ dependencies = [ [[package]] name = "tracing-core" -version = "0.1.33" +version = "0.1.34" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e672c95779cf947c5311f83787af4fa8fffd12fb27e4993211a84bdfd9610f9c" +checksum = "b9d12581f227e93f094d3af2ae690a574abb8a2b9b7a96e7cfe9647b2b617678" dependencies = [ "once_cell", "valuable", @@ -1013,9 +1018,9 @@ dependencies = [ [[package]] name = "unicode-ident" -version = "1.0.18" +version = "1.0.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512" +checksum = "f63a545481291138910575129486daeaf8ac54aee4387fe7906919f7830c7d9d" [[package]] name = "utf8parse" @@ -1031,21 +1036,22 @@ checksum = "ba73ea9cf16a25df0c8caa16c51acb937d5712a8429db78a3ee29d5dcacd3a65" [[package]] name = "wasm-bindgen" -version = "0.2.100" +version = "0.2.101" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5" +checksum = "7e14915cadd45b529bb8d1f343c4ed0ac1de926144b746e2710f9cd05df6603b" dependencies = [ "cfg-if", "once_cell", "rustversion", "wasm-bindgen-macro", + "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-backend" -version = "0.2.100" +version = "0.2.101" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2f0a0651a5c2bc21487bde11ee802ccaf4c51935d0d3d42a6101f98161700bc6" +checksum = "e28d1ba982ca7923fd01448d5c30c6864d0a14109560296a162f80f305fb93bb" dependencies = [ "bumpalo", "log", @@ -1057,9 +1063,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro" -version = "0.2.100" +version = "0.2.101" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7fe63fc6d09ed3792bd0897b314f53de8e16568c2b3f7982f468c0bf9bd0b407" +checksum = "7c3d463ae3eff775b0c45df9da45d68837702ac35af998361e2c84e7c5ec1b0d" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -1067,9 +1073,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.100" +version = "0.2.101" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ae87ea40c9f689fc23f209965b6fb8a99ad69aeeb0231408be24920604395de" +checksum = "7bb4ce89b08211f923caf51d527662b75bdc9c9c7aab40f86dcb9fb85ac552aa" dependencies = [ "proc-macro2", "quote", @@ -1080,9 +1086,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-shared" -version = "0.2.100" +version = "0.2.101" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1a05d73b933a847d6cccdda8f838a22ff101ad9bf93e33684f39c1f5f0eece3d" +checksum = "f143854a3b13752c6950862c906306adb27c7e839f7414cec8fea35beab624c1" dependencies = [ "unicode-ident", ] @@ -1111,13 +1117,13 @@ checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" [[package]] name = "windows-core" -version = "0.61.0" +version = "0.62.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4763c1de310c86d75a878046489e2e5ba02c649d185f21c67d4cf8a56d098980" +checksum = "57fe7168f7de578d2d8a05b07fd61870d2e73b4020e9f49aa00da8471723497c" dependencies = [ "windows-implement", "windows-interface", - "windows-link", + "windows-link 0.2.0", "windows-result", "windows-strings", ] @@ -1146,26 +1152,32 @@ dependencies = [ [[package]] name = "windows-link" -version = "0.1.1" +version = "0.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "76840935b766e1b0a05c0066835fb9ec80071d4c09a16f6bd5f7e655e3c14c38" +checksum = "5e6ad25900d524eaabdbbb96d20b4311e1e7ae1699af4fb28c17ae66c80d798a" + +[[package]] +name = "windows-link" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "45e46c0661abb7180e7b9c281db115305d49ca1709ab8242adf09666d2173c65" [[package]] name = "windows-result" -version = "0.3.2" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c64fd11a4fd95df68efcfee5f44a294fe71b8bc6a91993e2791938abcc712252" +checksum = "7084dcc306f89883455a206237404d3eaf961e5bd7e0f312f7c91f57eb44167f" dependencies = [ - "windows-link", + "windows-link 0.2.0", ] [[package]] name = "windows-strings" -version = "0.4.0" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a2ba9642430ee452d5a7aa78d72907ebe8cfda358e8cb7918a2050581322f97" +checksum = "7218c655a553b0bed4426cf54b20d7ba363ef543b52d515b3e48d7fd55318dda" dependencies = [ - "windows-link", + "windows-link 0.2.0", ] [[package]] @@ -1179,11 +1191,11 @@ dependencies = [ [[package]] name = "windows-sys" -version = "0.59.0" +version = "0.60.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b" +checksum = "f2f500e4d28234f72040990ec9d39e3a6b950f9f22d3dba18416c35882612bcb" dependencies = [ - "windows-targets 0.52.6", + "windows-targets 0.53.3", ] [[package]] @@ -1210,13 +1222,30 @@ dependencies = [ "windows_aarch64_gnullvm 0.52.6", "windows_aarch64_msvc 0.52.6", "windows_i686_gnu 0.52.6", - "windows_i686_gnullvm", + "windows_i686_gnullvm 0.52.6", "windows_i686_msvc 0.52.6", "windows_x86_64_gnu 0.52.6", "windows_x86_64_gnullvm 0.52.6", "windows_x86_64_msvc 0.52.6", ] +[[package]] +name = "windows-targets" +version = "0.53.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d5fe6031c4041849d7c496a8ded650796e7b6ecc19df1a431c1a363342e5dc91" +dependencies = [ + "windows-link 0.1.3", + "windows_aarch64_gnullvm 0.53.0", + "windows_aarch64_msvc 0.53.0", + "windows_i686_gnu 0.53.0", + "windows_i686_gnullvm 0.53.0", + "windows_i686_msvc 0.53.0", + "windows_x86_64_gnu 0.53.0", + "windows_x86_64_gnullvm 0.53.0", + "windows_x86_64_msvc 0.53.0", +] + [[package]] name = "windows_aarch64_gnullvm" version = "0.48.5" @@ -1229,6 +1258,12 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3" +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "86b8d5f90ddd19cb4a147a5fa63ca848db3df085e25fee3cc10b39b6eebae764" + [[package]] name = "windows_aarch64_msvc" version = "0.48.5" @@ -1241,6 +1276,12 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469" +[[package]] +name = "windows_aarch64_msvc" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c7651a1f62a11b8cbd5e0d42526e55f2c99886c77e007179efff86c2b137e66c" + [[package]] name = "windows_i686_gnu" version = "0.48.5" @@ -1253,12 +1294,24 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b" +[[package]] +name = "windows_i686_gnu" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c1dc67659d35f387f5f6c479dc4e28f1d4bb90ddd1a5d3da2e5d97b42d6272c3" + [[package]] name = "windows_i686_gnullvm" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66" +[[package]] +name = "windows_i686_gnullvm" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9ce6ccbdedbf6d6354471319e781c0dfef054c81fbc7cf83f338a4296c0cae11" + [[package]] name = "windows_i686_msvc" version = "0.48.5" @@ -1271,6 +1324,12 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66" +[[package]] +name = "windows_i686_msvc" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "581fee95406bb13382d2f65cd4a908ca7b1e4c2f1917f143ba16efe98a589b5d" + [[package]] name = "windows_x86_64_gnu" version = "0.48.5" @@ -1283,6 +1342,12 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78" +[[package]] +name = "windows_x86_64_gnu" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2e55b5ac9ea33f2fc1716d1742db15574fd6fc8dadc51caab1c16a3d3b4190ba" + [[package]] name = "windows_x86_64_gnullvm" version = "0.48.5" @@ -1295,6 +1360,12 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d" +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0a6e035dd0599267ce1ee132e51c27dd29437f63325753051e71dd9e42406c57" + [[package]] name = "windows_x86_64_msvc" version = "0.48.5" @@ -1307,11 +1378,17 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec" +[[package]] +name = "windows_x86_64_msvc" +version = "0.53.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "271414315aff87387382ec3d271b52d7ae78726f5d44ac98b4f4030c91880486" + [[package]] name = "winnow" -version = "0.7.7" +version = "0.7.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6cb8234a863ea0e8cd7284fcdd4f145233eb00fee02bbdd9861aec44e6477bc5" +checksum = "21a0236b59786fed61e2a80582dd500fe61f18b5dca67a4a067d0bc9039339cf" dependencies = [ "memchr", ] diff --git a/data/main.py b/data/main.py index 502f5b5..2151536 100644 --- a/data/main.py +++ b/data/main.py @@ -345,7 +345,29 @@ def probes(self, gid): def make_cable_cell(self, gid): mrf, dec = self.load_cable_data(gid) - pwl = A.place_pwlin(mrf) + + x, y, z = rec.gid_to_meta[gid]["position"] # soma location + xrot, yrot, zrot = rec.gid_to_meta[gid]["rotation"] # rotation angles + rot = ( + A.isometry.rotate(xrot, 1, 0, 0) + * A.isometry.rotate(yrot, 0, 1, 0) + * A.isometry.rotate(zrot, 0, 0, 1) + ) + shifted = A.isometry.translate(-x, -y, -z) * rot + + # get translation and rotation + dP = A.place_pwlin(mrf, shifted).at(A.location(0, 0.5)) + dx = -dP.x + dy = -dP.y + dz = -dP.z + + print(gid, dx, dy, dz) + + # apply translation and rotation + pwl = A.place_pwlin( + mrf, + rot * A.isometry.translate(dx, dy, dz), + ) lbl = A.label_dict().add_swc_tags() # NOTE in theory we could have more and in other places... dec.place( @@ -436,7 +458,7 @@ def load_cable_data(self, gid): self.cable_data[gid] = (mrf, dec) timing.toc("build/simulation/io") mrf, dec = self.cable_data[gid] - return mrf, A.decor(dec) # NOTE copy that decor!! + return mrf, A.decor(dec) # NOTE copy that decor!! timing.tic("build/recipe") @@ -448,6 +470,7 @@ def load_cable_data(self, gid): comm = None if have_mpi: from mpi4py import MPI + comm = MPI.COMM_WORLD gpu = None diff --git a/src/gen.rs b/src/gen.rs index 5bb2a76..efda211 100644 --- a/src/gen.rs +++ b/src/gen.rs @@ -28,6 +28,10 @@ pub struct CellMetaData { pub population: String, /// cell type label pub type_id: u64, + /// cell position coordinates + pub position: (f64, f64, f64), + /// cell rotation angles + pub rotation: (f64, f64, f64), } impl CellMetaData { @@ -42,6 +46,8 @@ impl CellMetaData { population: node.pop.to_string(), kind, type_id: node.node_type.type_id, + position: node.position, + rotation: node.rotation, } } } diff --git a/src/sim.rs b/src/sim.rs index 5c1d30f..21ad78e 100644 --- a/src/sim.rs +++ b/src/sim.rs @@ -538,6 +538,10 @@ pub struct Node { pub dynamics: Map, /// Custom parameters extracted from the population. pub custom: Map, + /// Node position coordinates (x, y, z) + pub position: (f64, f64, f64), + /// Node rotation angles (rotation_angle_xaxis, rotation_angle_yaxis, rotation_angle_zaxis) + pub rotation: (f64, f64, f64), } /// Bookeeping: index into top-level structure, ie population `pop` is stored at @@ -1244,6 +1248,25 @@ impl Simulation { custom.insert(k.to_string(), vs[group_index]); } + // Extract position coordinates (x, y, z) + let get_cell_attributes = |c: &str| -> f64 { + if let Some(cs) = group.custom.get(c) { + cs[group_index] + } else if let Some(Attribute::Float(val)) = node_type.attributes().get(c) { + *val + } else { + 0.0 // default value + } + }; + let pos_x = get_cell_attributes("x"); + let pos_y = get_cell_attributes("y"); + let pos_z = get_cell_attributes("z"); + + // Extract rotation angles + let rot_x = get_cell_attributes("rotation_angle_xaxis"); + let rot_y = get_cell_attributes("rotation_angle_yaxis"); + let rot_z = get_cell_attributes("rotation_angle_zaxis"); + let incoming_edges = self.reify_edges(&node_population.name, *node_id)?; Ok(Node { @@ -1257,6 +1280,8 @@ impl Simulation { incoming_edges, dynamics, custom, + position: (pos_x, pos_y, pos_z), + rotation: (rot_x, rot_y, rot_z), }) } }