diff --git a/README.md b/README.md index 4aefd21..7f015fe 100644 --- a/README.md +++ b/README.md @@ -81,7 +81,7 @@ Main arguments: --min-aln-len-ratio MIN_ALN_LEN_RATIO Minimum ratio of alignment length to marker gene length [default: 0.75] --min-fidelity MIN_FIDELITY - Minimum acceptable log(P)/aln_length [deafult: log(0.5)] + Minimum acceptable log(P)/aln_length [deafult: 0.5] --ref-weight REF_WEIGHT Scale factor for log(P) dependent on alignment length: log(P) <- log(P) + REF_WEIGHT * log(aln_length_ratio) [default: 1.0] ``` @@ -114,4 +114,4 @@ Additional flags: ## References -Sapoval, Nicolae, Yunxi Liu, Kristen D. Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G. Nute et al. "Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet." *bioRxiv* (2024). [DOI:[10.1101/2024.06.01.596961](https://doi.org/10.1101/2024.06.01.596961)] \ No newline at end of file +Sapoval, Nicolae, Yunxi Liu, Kristen D. Curry, Bryce Kille, Wenyu Huang, Natalie Kokroko, Michael G. Nute et al. "Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet." *bioRxiv* (2024). [DOI:[10.1101/2024.06.01.596961](https://doi.org/10.1101/2024.06.01.596961)]