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2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ readme = "README.md"
[tool.poetry.dependencies]
python = "^3.11"
# use `rev` to pin to a specific hash, or tag, from the git repo
labretriever = {git = "https://github.com/cmatKhan/labretriever.git", rev = "ecaa7e3"}
labretriever = {git = "https://github.com/cmatKhan/labretriever.git", rev = "9037f02"}
shiny = "^1.4.0"
shinywidgets = "^0.7.1"
upsetjs-jupyter-widget = "^1.9.0"
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12 changes: 12 additions & 0 deletions tfbpshiny/brentlab_yeast_collection.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,10 @@ repositories:
assay: CallingCards
display_name: "2026 Calling Cards"
db_name: callingcards
description: >-
Data generated with calling cards, a method that inserts transposons
near TF binding sites, from cells growing on synthetic complete media
at room temperature with galactose as the sole carbon source.
sample_id:
field: gm_id

Expand Down Expand Up @@ -57,6 +61,10 @@ repositories:
data_type: binding
assay: ChIPexo
display_name: "2021 ChIP-exo (Rossi)"
description: >-
ChIP-exo (a variant of ChIP-seq) data, primarily in YPD batch
cultures at 25C. Includes DNA-binding transcription factors and
many other chromatin factors.
db_name: rossi
sample_id:
field: sample_id
Expand Down Expand Up @@ -112,6 +120,10 @@ repositories:
data_type: perturbation
assay: ChIPexo
display_name: "2025 Degron (Mahendrawada)"
description: >-
RNA-seq expression data generated from nascent RNA (4TU labelling and
purification) following depletion of a given TF via the auxin-inducible
degron system.
db_name: degron
sample_id:
field: sample_id
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