Describe the bug
When 'seacr_stringent' without control is added in the analysis, the pipeline has the following error:
RuleException in rule seacr_stringent in file /vf/users/CCBR_Pipeliner/Pipelines/CARLISLE/.v2.8.0/workflow/rules/peakcalls.smk, line 439: NameError: The name 'qthresholds' is unknown in this context. Did you mean 'wildcards.qthresholds'?, when formatting the following:
To Reproduce
$carlisle -m=run -w=$wd
Expected behavior
'seacr_stringent' without control should work?
Describe the bug
When 'seacr_stringent' without control is added in the analysis, the pipeline has the following error:
RuleException in rule seacr_stringent in file /vf/users/CCBR_Pipeliner/Pipelines/CARLISLE/.v2.8.0/workflow/rules/peakcalls.smk, line 439: NameError: The name 'qthresholds' is unknown in this context. Did you mean 'wildcards.qthresholds'?, when formatting the following:To Reproduce
$carlisle -m=run -w=$wd
Expected behavior
'seacr_stringent' without control should work?