jobby fails with Permission denied on pandas_parser.so, breaking onsuccess (student profile)

[kopardev]

Summary

Running RENEE v2.7.7 under the "student" profile, the onsuccess block in the Snakefile fails because jobby (via ccbr_tools v0.7) cannot import pandas.

Error

ImportError: /vf/users/CCBR_Pipeliner/db/PipeDB/miniforge3/lib/python3.12/site-packages/pandas/_libs/pandas_parser.cpython-312-x86_64-linux-gnu.so: cannot open shared object file: Permission denied
...
Exception: ❌ Missing required package: pandas. Install it with `pip install pandas`.
CalledProcessError in file .../workflow/Snakefile, line 244

Context

• Output dir: /data/student40/hcc_renee_out_260701
• RENEE version: v2.7.7
• Path: /vf/users/CCBR_Pipeliner/Pipelines/RENEE/vnk_renee_dev/src/renee
• ccbr_tools: v0.7 (bin at /data/CCBR_Pipeliner/Tools/ccbr_tools/v0.7/bin)

This is one of the errors showing up while testing the "student" profile for Joe. Likely a permissions issue on the shared miniforge3 env — the student user may not have read access to that conda env's compiled libs.

cc @kelly-sovacool

[kopardev]

@kelly-sovacool ... it may be a good idea to recursively run the following daily as a helix cronjob:
chown -R :CCBR_Pipeliner /vf/users/CCBR_Pipeliner/db/PipeDB/miniforge3 2>/dev/null && chmod -R a+rX /vf/users/CCBR_Pipeliner/db/PipeDB/miniforge3 2>/dev/null