Name		Name	Last commit message	Last commit date
bin		bin
README.md		README.md
main.nf		main.nf
nextflow.config		nextflow.config

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nf-arcashla

Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)

Inputs

samplesheet: Path to a CSV with columns for sample, fastq_1, and fastq_2
genomeDir: Path to a folder containing the STAR index for chr6
outdir: Output folder path

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Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)

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