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Releases: DeepChainBio/bio-transformers

release version 0.1.17

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@delfosseaurelien delfosseaurelien released this 01 Mar 15:56

Fix transformers requirements.

release 0.1.16 package version

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@delfosseaurelien delfosseaurelien released this 21 Oct 15:48
  • Add ligthning_utils tools to train with 'DDP' accelerator

release package 0.1.15

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@delfosseaurelien delfosseaurelien released this 17 Sep 16:01

Fix ray issue when compute embeddings

Release package 0.1.14

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@delfosseaurelien delfosseaurelien released this 17 Sep 06:41
  • Fix Distributed sampler for data sampling data efficiency in pytorch-lightning

update package release 0.1.13

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@delfosseaurelien delfosseaurelien released this 06 Sep 13:44

update package 0.1.13

release version 0.1.12

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@delfosseaurelien delfosseaurelien released this 01 Sep 13:52

Fix get_batch_indices functions

release version 0.1.11

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@delfosseaurelien delfosseaurelien released this 01 Sep 13:34
efff2cd

Update finetune functions:

  • add shuffling of pre-computed batches
  • remove batch arguments
  • add crop_size arguments to manage different sequence length

release package 0.1.10

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@delfosseaurelien delfosseaurelien released this 20 Aug 11:45

add model esm_msa1b_t12_100M_UR50S

release version 0.1.9

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@delfosseaurelien delfosseaurelien released this 11 Aug 08:37

Fix alphabet dataloader standard tokens

release package version 0.1.8

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@delfosseaurelien delfosseaurelien released this 11 Aug 06:48
  • Update AlphabetDataloader class
  • Add mutation score function