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1. pytfa pytfa Public

   A Python 3 implementation of Thermodynamics-based Flux Analysis

   Linear Programming 45 29

2. etfl etfl Public

   ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

   Python 17 17

3. skimpy skimpy Public

   Symbolic Kinetic Models with Python

   Python 35 14

4. redhuman redhuman Public

   redHUMAN: analyzing human metabolism and growth media through systematic reductions of thermodynamically curated genome-scale models

   MATLAB 6 2

5. rekindle rekindle Public

   REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models of cellular metabolism

   Python 10 3

6. RENAISSANCE RENAISSANCE Public

   REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies

   Jupyter Notebook 18 3