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Merged
mkuehbach merged 4 commits into from
Aug 7, 2025
Merged

Connect more intricate concepts from NXmicrostructure #406

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c5d2001
Connect more intricate concepts from NXmicrostructure to the EBSD exa…
atomprobe-tc Aug 4, 2025
f36cded
Reintroduce the incorrectly removed nameType partial
atomprobe-tc Aug 4, 2025
6acdc27
Final polishing for the pynxtools v0.11.1 release
atomprobe-tc Aug 7, 2025
4a54840
Grammar
atomprobe-tc Aug 7, 2025
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80 changes: 73 additions & 7 deletions applications/NXem.nxdl.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -1680,6 +1680,45 @@ is required to provide such information in this way!-->
<group name="indexing" type="NXprocess" optional="true">
<field name="number_of_scan_points" type="NX_UINT"/>
<field name="indexing_rate" type="NX_NUMBER" recommended="true"/>
<group name="microstructureID" type="NXmicrostructure" nameType="partial" minOccurs="0" maxOccurs="unbounded">
<group name="configuration" type="NXprocess">
<field name="dimensionality" type="NX_POSINT"/>
<field name="algorithm" type="NX_CHAR"/>
<field name="disorientation_threshold" type="NX_NUMBER"/>
<group name="programID" type="NXprogram" nameType="partial" recommended="true">
<field name="program" type="NX_CHAR">
<attribute name="version" type="NX_CHAR"/>
</field>
<group name="mtex" type="NXmicrostructure_mtex_config" optional="true"/>
</group>
</group>
<group name="grid" type="NXcg_grid" optional="true"/>
<group name="points" type="NXcg_point" optional="true"/>
<group name="polylines" type="NXcg_polyline" optional="true"/>
<group name="triangles" type="NXcg_triangle" optional="true"/>
<group name="polygons" type="NXcg_polygon" optional="true"/>
<group name="polyhedra" type="NXcg_polyhedron" optional="true"/>
<group name="crystals" type="NXmicrostructure_feature" optional="true">
<field name="representation" type="NX_CHAR" recommended="true"/>
<field name="number_of_crystals" type="NX_UINT"/>
<field name="index_offset" type="NX_INT"/>
</group>
<group name="interfaces" type="NXmicrostructure_feature" optional="true">
<field name="representation" type="NX_CHAR" recommended="true"/>
<field name="number_of_interfaces" type="NX_UINT"/>
<field name="index_offset" type="NX_INT"/>
</group>
<group name="triple_junctions" type="NXmicrostructure_feature" optional="true">
<field name="representation" type="NX_CHAR" recommended="true"/>
<field name="number_of_junctions" type="NX_UINT"/>
<field name="index_offset" type="NX_INT"/>
</group>
<group name="quadruple_junctions" type="NXmicrostructure_feature" optional="true">
<field name="representation" type="NX_CHAR" recommended="true"/>
<field name="number_of_junctions" type="NX_UINT"/>
<field name="index_offset" type="NX_INT"/>
</group>
</group>
<group name="source" type="NXnote" optional="true">
<field name="type" type="NX_CHAR" recommended="true"/>
<field name="file_name" type="NX_CHAR"/>
Expand Down Expand Up @@ -1708,7 +1747,7 @@ not wish to duplicate all payload data-->
<group name="map" type="NXdata">
<attribute name="signal" type="NX_CHAR"/>
<attribute name="axes" type="NX_CHAR"/>
<attribute name="AXISNAME_indices" type="NX_UINT" nameType="partial"/>
<attribute name="AXISNAME_indices" type="NX_UINT"/>
<field name="title" type="NX_CHAR" recommended="true"/>
<field name="data" type="NX_NUMBER">
<attribute name="long_name" type="NX_CHAR"/>
Expand All @@ -1726,7 +1765,7 @@ not wish to duplicate all payload data-->
<group name="legend" type="NXdata">
<attribute name="signal" type="NX_CHAR"/>
<attribute name="axes" type="NX_CHAR"/>
<attribute name="AXISNAME_indices" type="NX_UINT" nameType="partial"/>
<attribute name="AXISNAME_indices" type="NX_UINT"/>
<field name="title" type="NX_CHAR" recommended="true"/>
<field name="data" type="NX_NUMBER">
<attribute name="long_name" type="NX_CHAR"/>
Expand All @@ -1739,15 +1778,42 @@ not wish to duplicate all payload data-->
</field>
</group>
</group>
<group name="odfID" type="NXmicrostructure_odf" nameType="partial" optional="true"/>
<group name="pfID" type="NXmicrostructure_pf" nameType="partial" optional="true"/>
<group name="odfID" type="NXmicrostructure_odf" nameType="partial" minOccurs="0" maxOccurs="unbounded">
<group name="configuration" type="NXparameters" recommended="true">
<field name="crystal_symmetry_point_group" type="NX_CHAR"/>
<field name="specimen_symmetry_point_group" type="NX_CHAR"/>
<field name="kernel_halfwidth" type="NX_NUMBER"/>
<field name="kernel_name" type="NX_CHAR"/>
<field name="resolution" type="NX_NUMBER"/>
</group>
<group name="characteristics" type="NXprocess" optional="true">
<field name="texture_index" type="NX_FLOAT"/>
</group>
<group name="phi_two_plot" type="NXdata">
<attribute name="signal" type="NX_CHAR"/>
<attribute name="axes" type="NX_CHAR"/>
<attribute name="AXISNAME_indices" type="NX_UINT"/>
<field name="title" type="NX_CHAR" recommended="true"/>
<field name="intensity" type="NX_NUMBER">
<attribute name="long_name" type="NX_CHAR"/>
</field>
<field name="varphi_one" type="NX_NUMBER">
<attribute name="long_name" type="NX_CHAR"/>
</field>
<field name="capital_phi" type="NX_NUMBER">
<attribute name="long_name" type="NX_CHAR"/>
</field>
<field name="varphi_two" type="NX_NUMBER">
<attribute name="long_name" type="NX_CHAR"/>
</field>
</group>
</group>
<group name="pfID" type="NXmicrostructure_pf" nameType="partial" minOccurs="0" maxOccurs="unbounded"/>
</group>
<!--microstructure of the entire ROI-->
<group name="microstructureID" type="NXmicrostructure" nameType="partial" optional="true"/>
<group name="roi" type="NXdata" recommended="true">
<attribute name="signal" type="NX_CHAR"/>
<attribute name="axes" type="NX_CHAR"/>
<attribute name="AXISNAME_indices" type="NX_UINT" nameType="partial"/>
<attribute name="AXISNAME_indices" type="NX_UINT"/>
<field name="title" type="NX_CHAR" recommended="true"/>
<field name="descriptor" type="NX_CHAR" recommended="true"/>
<field name="data" type="NX_NUMBER"/>
Expand Down
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