CLI tool, valdo.pipeline - #45

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feature/pipeline-cli

Commits on May 4, 2026

Add valdo.pipeline CLI with per-stage YAML-driven execution

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3ec2bf6
Remove twinning-specific language from reindex documentation

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9e3b8d7
Add valdo.refine prerequisite guidance before add_phases_and_blobs

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f103984
Add PTP1B_pipeline/ to .gitignore

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f09b994
Add reindex validation plots and skip-if-done detection

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59e93bb
Fix Scaler_pool.batch_scaling call — when_opt not supported in pool variant

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e76470d
Support .txt file path in expand_glob_field for explicit file lists

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868d621
Add scale validation plots and skip-if-done detection

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743aebb
Add PTP1B pipeline run docs, configs, and fix VAE training defaults

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52b3bd9
Add validation plots from reindex and scale stages

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439b87c
Fix NaN in VAE training; add scale all-NaN detection; clean dataset

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50a2b0f
Add reconstruct and rescale steps (pipeline steps 6-7)

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f0798b0
Add tag_blobs step and AUC plot script for PTP1B pipeline

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7af4538
Rewrite PIPELINE_RUN.md as a new-user-friendly guide; add helper scripts

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472ed71

Commits on May 8, 2026

Align pipeline defaults with Doeke's settings; fix bugs and improve code quality

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a83d2c2
Add filter stage, AUC-vs-N plot, bound model fix; update pipeline run results

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796da57

Commits on May 11, 2026