Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions src/igvfd/schemas/changelogs/phenotype_term.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@

### Minor changes since schema version 5

* Update `term_id` regex to include `BAO` as a valid ontology prefix.
* Update `aliases` regex to add `hongbo-liu` as a namespace.
* Update `aliases` regex to add `yang-li` as a namespace.
* Add `preview_timestamp`.
Expand Down
4 changes: 2 additions & 2 deletions src/igvfd/schemas/phenotype_term.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"title": "Phenotype Term",
"description": "An ontology term from Experimental Factor Ontology (EFO), Human Disease Ontology (DOID), Human Phenotype Ontology (HP), Mondo Disease Ontology (MONDO), National Cancer Institute Thesaurus (NCIT), Ontology of Biological Attributes (OBA), or Gene Ontology (GO) for phenotypes, diseases, traits and biological processes.",
"description": "An ontology term from Experimental Factor Ontology (EFO), Human Disease Ontology (DOID), Human Phenotype Ontology (HP), Mondo Disease Ontology (MONDO), National Cancer Institute Thesaurus (NCIT), Ontology of Biological Attributes (OBA), BioAssay Ontology (BAO), or Gene Ontology (GO) for phenotypes, diseases, traits and biological processes.",
"$id": "/profiles/phenotype_term.json",
"$schema": "https://json-schema.org/draft/2020-12/schema",
"type": "object",
Expand Down Expand Up @@ -47,7 +47,7 @@
"description": "An ontology term identifier describing a phenotype.",
"permission": "admin_only",
"type": "string",
"pattern": "^(DOID|EFO|HP|MONDO|OBA|NTR|GO):[0-9]{2,8}|OBA:VT[0-9]{2,8}|NCIT:C[0-9]{2,8}$"
"pattern": "^(DOID|EFO|HP|MONDO|OBA|NTR|GO|BAO):[0-9]{2,8}|OBA:VT[0-9]{2,8}|NCIT:C[0-9]{2,8}$"
}
},
"fuzzy_searchable_fields": [
Expand Down