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Merged
eboyer221 merged 1 commit into from
Jul 27, 2026
Merged

Add McKim to authors; fix URL casing and update citation #42

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8 changes: 5 additions & 3 deletions DESCRIPTION
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,9 @@ Authors@R: c(
person("Abhirupa", "Ghosh", , "abhirupa.ghosh@cuanschutz.edu", role = "ctb"),
person("David", "Mayer", , "david.mayer@cuanschutz.edu", role = "ctb"),
person("Evan", "Brenner", , "evan.brenner@cuanschutz.edu", role = "ctb"),
person("Charmie", "Vang", , "charmie.vang@cuanschutz.edu", role = "ctb")
person("Charmie", "Vang", , "charmie.vang@cuanschutz.edu", role = "ctb"),
person("Alexander", "McKim", , "alexander.mckim@cuanschutz.edu", role = "ctb",
comment = c(ORCID = "0000-0002-7802-7591"))
)
Description: Interactive Shiny dashboard for exploring antimicrobial resistance
(AMR) data and machine learning model results from the AMR package suite.
Expand Down Expand Up @@ -58,6 +60,6 @@ biocViews:
FunctionalGenomics,
Genetics,
Visualization
URL: https://github.com/jravilab/amRviz
BugReports: https://github.com/jravilab/amRviz/issues
URL: https://github.com/JRaviLab/amRviz
BugReports: https://github.com/JRaviLab/amRviz/issues
Config/roxygen2/version: 8.0.0
13 changes: 7 additions & 6 deletions README.Rmd
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Expand Up @@ -187,12 +187,13 @@ amRviz/

If you use `amRviz` in your research, please cite:

```
Brenner E, Ghosh A, Boyer E, Vang C, Wolfe E, McKim A, Lesiyon R, Mayer D, Ravi J. (2026).
amR: an R package suite to predict antimicrobial resistance in bacterial pathogens.
R package version 0.99.0.
https://github.com/JRaviLab/amR
```
> Ghosh A^, Brenner EP^, Boyer EA, McKim AP, Vang CK, Wolfe EP, Mayer D, Lesiyon RL, Ravi J.
>
> amR: an R package suite to predict antimicrobial resistance in bacterial pathogens.
>
> bioRxiv. 2026. DOI: [10.64898/2026.07.10.734579](https://doi.org/10.64898/2026.07.10.734579).

^ Co-first authors

## For Bioconductor submission

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12 changes: 8 additions & 4 deletions README.md
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Expand Up @@ -197,10 +197,14 @@ organized into per-species subdirectories:

If you use `amRviz` in your research, please cite:

Brenner E, Ghosh A, Boyer E, Vang C, Wolfe E, McKim A, Lesiyon R, Mayer D, Ravi J. (2026).
amR: an R package suite to predict antimicrobial resistance in bacterial pathogens.
R package version 0.99.0.
https://github.com/JRaviLab/amR
> Ghosh A^, Brenner EP^, Boyer EA, McKim AP, Vang CK, Wolfe EP, Mayer D, Lesiyon RL, Ravi J.
>
> amR: an R package suite to predict antimicrobial resistance in bacterial pathogens.
>
> bioRxiv. 2026. DOI:
> [10.64898/2026.07.10.734579](https://doi.org/10.64898/2026.07.10.734579).

^ Co-first authors

## For Bioconductor submission

Expand Down
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