Copier update: through base v131

[ejfine]

Pull in upstream template changes

Summary by CodeRabbit

• New Features

  • Added Claude Code integration with advanced commands (/red, /green, /refactor, /spike, /issue, /polish) for streamlined development workflows.
  • Integrated Beads task-tracking system with Dolt database backend for structured issue management.
  • Enhanced devcontainer setup with automatic Beads initialization and Claude CLI support.

• Documentation

  • Added comprehensive agent guidelines in AGENTS.md.
  • Created CONTRIBUTING.md and CODE_OF_CONDUCT.md for open-source projects.
  • Added multiple Claude command documentation files for user guidance.

• Configuration & Tooling

  • Updated GitHub Actions workflows and dependencies.
  • Configured Beads MCP hooks and caveman mode for Claude sessions.
  • Updated devcontainer with new environment variables and services.

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ℹ️ Review info

⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

Run ID: 377af8d3-bb6b-46b5-a9a9-c26377e8d6da

📥 Commits

Reviewing files that changed from the base of the PR and between 758864d and 2d95404.

⛔ Files ignored due to path filters (3)

• .claude/package-lock.json is excluded by !**/package-lock.json
• template/.claude/package-lock.json is excluded by !**/package-lock.json
• uv.lock is excluded by !**/*.lock

📒 Files selected for processing (143)

• .claude/.beads/.gitignore
• .claude/.beads/config.yaml
• .claude/.beads/metadata.json
• .claude/commands/add-command.md
• .claude/commands/commit.md
• .claude/commands/create-adr.md
• .claude/commands/create-issues.md
• .claude/commands/gap.md
• .claude/commands/green.md
• .claude/commands/issue.md
• .claude/commands/polish.md
• .claude/commands/red.md
• .claude/commands/refactor.md
• .claude/commands/research.md
• .claude/commands/simplify.md
• .claude/commands/spike.md
• .claude/commands/summarize.md
• .claude/commands/tdd-review.md
• .claude/commands/tdd.md
• .claude/helpers/merge-claude-settings.sh
• .claude/hooks/bash-chain-guard.js
• .claude/hooks/caveman-activate.js
• .claude/hooks/caveman-config.js
• .claude/hooks/caveman-mode-tracker.js
• .claude/hooks/package.json
• .claude/package.json
• .claude/settings/basics.jsonc
• .claude/settings/hooks.jsonc
• .claude/settings/permissions/additional-dirs.jsonc
• .claude/settings/permissions/bash.jsonc
• .claude/settings/permissions/read.jsonc
• .claude/settings/permissions/write.jsonc
• .claude/skills/address-pr-comments/SKILL.md
• .claude/skills/address-pr-comments/check-footer.py
• .claude/skills/address-pr-comments/fetch-pr-comments.py
• .claude/skills/address-pr-comments/post-reply.py
• .claude/skills/address-pr-comments/utils.py
• .claude/skills/caveman/SKILL.md
• .coderabbit.yaml
• .copier-answers.yml
• .coveragerc
• .devcontainer/Dockerfile
• .devcontainer/devcontainer.json
• .devcontainer/docker-compose.yml
• .devcontainer/install-ci-tooling.py
• .devcontainer/manual-setup-deps.py
• .devcontainer/on-create-command.sh
• .devcontainer/post-start-command.sh
• .github/actions/check-skip-duplicates/action.yml
• .github/actions/install_deps/action.yml
• .github/dependabot.yml
• .github/reusable_workflows/build-docker-image.yaml
• .github/workflows/ci.yaml
• .github/workflows/confirm-on-tagged-copier-template.yaml
• .github/workflows/hash_git_files.py
• .github/workflows/pre-commit.yaml
• .github/workflows/replace_private_package_registries.py
• .github/workflows/tag-on-merge.yaml
• .gitignore
• .pre-commit-config.yaml
• AGENTS.md
• CLAUDE.md
• README.md
• copier.yml
• extensions/context.py
• pyproject.toml
• pyrightconfig.json
• ruff-non-src.toml
• ruff.toml
• scripts/delete_false_positive_rej.py
• src/copier_tasks/__init__.py
• src/copier_tasks/remove_precommit_hooks.py
• template/.claude/.beads/.gitignore
• template/.claude/.beads/config.yaml
• template/.claude/.beads/metadata.json
• template/.claude/commands/add-command.md
• template/.claude/commands/commit.md
• template/.claude/commands/create-adr.md
• template/.claude/commands/create-issues.md
• template/.claude/commands/gap.md
• template/.claude/commands/green.md
• template/.claude/commands/issue.md
• template/.claude/commands/polish.md
• template/.claude/commands/red.md
• template/.claude/commands/refactor.md
• template/.claude/commands/research.md
• template/.claude/commands/simplify.md
• template/.claude/commands/spike.md
• template/.claude/commands/summarize.md
• template/.claude/commands/tdd-review.md
• template/.claude/commands/tdd.md
• template/.claude/helpers/merge-claude-settings.sh
• template/.claude/hooks/bash-chain-guard.js
• template/.claude/hooks/caveman-activate.js
• template/.claude/hooks/caveman-config.js
• template/.claude/hooks/caveman-mode-tracker.js
• template/.claude/hooks/package.json
• template/.claude/package.json
• template/.claude/settings/basics.jsonc
• template/.claude/settings/hooks.jsonc
• template/.claude/settings/permissions/additional-dirs.jsonc
• template/.claude/settings/permissions/bash.jsonc
• template/.claude/settings/permissions/read.jsonc
• template/.claude/settings/permissions/write.jsonc
• template/.claude/skills/address-pr-comments/SKILL.md
• template/.claude/skills/address-pr-comments/check-footer.py
• template/.claude/skills/address-pr-comments/fetch-pr-comments.py
• template/.claude/skills/address-pr-comments/post-reply.py
• template/.claude/skills/address-pr-comments/utils.py
• template/.claude/skills/caveman/SKILL.md
• template/.coderabbit.yaml
• template/.devcontainer/Dockerfile
• template/.devcontainer/devcontainer.json.jinja
• template/.devcontainer/docker-compose.yml.jinja
• template/.devcontainer/install-ci-tooling.py.jinja
• template/.devcontainer/manual-setup-deps.py
• template/.devcontainer/on-create-command.sh.jinja
• template/.devcontainer/post-start-command.sh.jinja
• template/.github/actions/ecr-auth/action.yml.jinja
• template/.github/actions/install_deps/action.yml
• template/.github/actions/pulumi_ephemeral_deploy/action.yml
• template/.github/dependabot.yml.jinja
• template/.github/workflows/ci.yaml.jinja
• template/.github/workflows/confirm-on-tagged-copier-template.yaml
• template/.github/workflows/hash_git_files.py
• template/.github/workflows/pre-commit.yaml
• template/.github/workflows/pulumi-aws.yml
• template/.gitignore
• template/.pre-commit-config.yaml
• template/AGENTS.md
• template/CLAUDE.md
• template/CONTRIBUTING.md
• template/pyrightconfig.json
• template/ruff-non-src.toml
• template/ruff.toml
• template/scripts/delete_false_positive_rej.py
• template/{% if is_open_source %}CODE_OF_CONDUCT.md{% endif %}
• template/{% if is_open_source %}LICENSE{% endif %}
• tests/copier_data/data1.yaml
• tests/copier_data/data2.yaml
• tests/unit/copier_tasks/__init__.py
• tests/unit/copier_tasks/helpers.py
• tests/unit/copier_tasks/test_remove_precommit_hooks.py

📝 Walkthrough

Walkthrough

Adds Claude Code hooks, permissions, skills, and Beads/Dolt configs; updates devcontainer (Dockerfile, compose, scripts) and CI/workflows; introduces copier template parity for these assets; adds helper scripts and unit tests; updates ignore, lint, coverage, and config files.

Changes

Claude integration, Devcontainer, CI, and Template parity

Layer / File(s)	Summary
Claude hooks, permissions, and skills .claude/**/*	Adds caveman activation/tracking hooks, bash-chain guard, permissions JSONC, skills, command docs, and settings merge helper.
Devcontainer + Beads/Dolt wiring .devcontainer/**/*, .claude/.beads/*	Bumps base image, configures Dolt service/env, safe.directory setup, installs Claude assets and bd, and initializes Beads.
CI/workflows and actions .github/**/*	Introduces duplicate-run gate, expands permissions, updates reusable Docker build, Dependabot, Pulumi actions, and hashing script.
Template synchronization template/**/*, extensions/context.py, copier.yml	Mirrors Claude/Beads, devcontainer, workflows, and configs into template; updates context versions and template questions/tasks.
Tooling, configs, tests AGENTS.md, pyproject.toml, ruff*.toml, .coveragerc, .pre-commit-config.yaml, scripts/*, src/copier_tasks/*, tests/**/*	Adds agent guidelines, coverage rules, ruff/pyright tweaks, helper scripts, pre-commit hook remover and unit tests, and fixtures.

Estimated code review effort

🎯 5 (Critical) | ⏱️ ~120 minutes