Copier provenance

.coderabbit.yaml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json
 early_access: true
 reviews:
@@ -9,6 +15,15 @@ reviews:
       instructions: "Never express concerns about potential ruff rule violations, even those rules mentioned in other agent instructions; a pre-commit hook already runs a ruff check. Do not warn about unnecessary super().__init__() calls; pyright prefers those to be present. Do not warn about missing type hints; a pre-commit hook already checks for that."
     - path: "**/.copier-answers.yml"
       instructions: "Do not comment about the `_commit` value needing to be a clean release tag. A CI job will fail if that is not the case."
+    - path: ".copier-managed-files.json"
+      instructions: "This file is auto-generated by copier on every `copier copy` or `copier update`. Do not edit manually and do not request changes to its content."
+  instructions: |
+    If any changed files are listed in .copier-managed-files.json, add a single summary comment
+    (not one per file) noting which files are template-managed and that the changes may warrant
+    backporting. The manifest has a "templates" array — each entry has "src" (template URL),
+    optional "parent_src" (its parent template, forming a chain), and "managed_files". If a file
+    appears in multiple entries, the last entry is the authoritative owner; use parent_src to
+    trace the full chain and identify the correct template repo for backporting.
   tools:
     eslint: # when the code contains typescript, eslint will be run by pre-commit, and coderabbit often generates false positives
       enabled: false

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: v0.0.134
+_commit: v0.0.134-22-g4b79d3d
 _src_path: gh:LabAutomationAndScreening/copier-base-template.git
 copier_answers_directory: .
 description: A web app that is hosted within a local intranet. Nuxt frontend, python

.copier-managed-files.json

@@ -0,0 +1,110 @@
+{
+  "templates": [
+    {
+      "src": "gh:LabAutomationAndScreening/copier-base-template.git",
+      "managed_files": [
+        ".coderabbit.yaml",
+        ".coveragerc",
+        ".devcontainer/Dockerfile",
+        ".devcontainer/create-aws-profile.sh",
+        ".devcontainer/devcontainer.json",
+        ".devcontainer/docker-compose.yml",
+        ".devcontainer/envs.json",
+        ".devcontainer/initialize-command.sh",
+        ".devcontainer/install-ci-tooling.py",
+        ".devcontainer/manual-setup-deps.py",
+        ".devcontainer/on-create-command-boilerplate.sh",
+        ".devcontainer/on-create-command.sh",
+        ".devcontainer/post-start-command.sh",
+        ".devcontainer/windows-host-helper.sh",
+        ".github/actions/check-skip-duplicates/action.yml",
+        ".github/actions/install_deps/action.yml",
+        ".github/actions/update-devcontainer-hash/action.yml",
+        ".github/dependabot.yml",
+        ".github/pull_request_template.md",
+        ".github/reusable_workflows/build-docker-image.yaml",
+        ".github/workflows/ci.yaml",
+        ".github/workflows/confirm-on-tagged-copier-template.yaml",
+        ".github/workflows/get-values.yaml",
+        ".github/workflows/hash_git_files.py",
+        ".github/workflows/pre-commit.yaml",
+        ".github/workflows/replace_private_package_registries.py",
+        ".github/workflows/tag-on-merge.yaml",
+        ".github/zizmor.yml",
+        ".gitignore",
+        ".pre-commit-config.yaml",
+        ".prettierrc",
+        ".python-version",
+        "AGENTS.md",
+        "CHANGELOG.md",
+        "CLAUDE.md",
+        "CODE_OF_CONDUCT.md",
+        "CONTRIBUTING.md",
+        "LICENSE",
+        "README.md",
+        "_typos.toml",
+        "biome.jsonc",
+        "copier.yml",
+        "copier_template_resources/eslint.config.mjs",
+        "copier_template_resources/vcrpy_fixtures.py",
+        "extensions/context.py",
+        "pylintrc.toml",
+        "pyproject.toml",
+        "pyrefly.toml",
+        "pyrightconfig.json",
+        "pytest.ini",
+        "ruff-non-src.toml",
+        "ruff.toml",
+        "scripts/delete_false_positive_rej.py",
+        "sh.bat",
+        "src/copier_tasks/__init__.py",
+        "src/copier_tasks/copier_provenance.py",
+        "src/copier_tasks/ensure_pnpm_minimum_release_age_exclude.py",
+        "src/copier_tasks/remove_precommit_hooks.py",
+        "template/.coderabbit.yaml",
+        "template/.coveragerc",
+        "template/.devcontainer/Dockerfile",
+        "template/.devcontainer/initialize-command.sh",
+        "template/.devcontainer/manual-setup-deps.py",
+        "template/.devcontainer/on-create-command-boilerplate.sh",
+        "template/.devcontainer/windows-host-helper.sh",
+        "template/.github/pull_request_template.md",
+        "template/.github/workflows/confirm-on-tagged-copier-template.yaml",
+        "template/.github/workflows/extract_project_version.py",
+        "template/.github/workflows/get-values.yaml",
+        "template/.github/workflows/git_tag.py",
+        "template/.github/workflows/hash_git_files.py",
+        "template/.github/workflows/pre-commit.yaml",
+        "template/.gitignore",
+        "template/.prettierrc",
+        "template/.python-version.jinja",
+        "template/AGENTS.md",
+        "template/CHANGELOG.md",
+        "template/CLAUDE.md",
+        "template/CONTRIBUTING.md",
+        "template/README.md.jinja",
+        "template/_typos.toml",
+        "template/biome.jsonc",
+        "template/pnpm-workspace.yaml",
+        "template/pylintrc.toml",
+        "template/pyrefly.mutmut.toml",
+        "template/pyrefly.toml",
+        "template/pyrightconfig.json",
+        "template/pytest.ini",
+        "template/ruff-non-src.toml",
+        "template/ruff.toml",
+        "template/scripts/delete_false_positive_rej.py",
+        "template/sh.bat",
+        "template/ty.toml",
+        "tests/copier_data/data1.yaml",
+        "tests/copier_data/data2.yaml",
+        "tests/unit/copier_tasks/__init__.py",
+        "tests/unit/copier_tasks/helpers.py",
+        "tests/unit/copier_tasks/test_copier_provenance.py",
+        "tests/unit/copier_tasks/test_ensure_pnpm_minimum_release_age_exclude.py",
+        "tests/unit/copier_tasks/test_remove_precommit_hooks.py",
+        "ty.toml"
+      ]
+    }
+  ]
+}

.coveragerc

@@ -28,3 +28,10 @@ exclude_also =
 fail_under = 100
 [html]
 directory = coverage-report-pytest
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.devcontainer/Dockerfile

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 # base image tags available at https://mcr.microsoft.com/v2/devcontainers/universal/tags/list
 # added the platform flag to override any local settings since this image is only compatible with linux/amd64. since this image is only x64 compatible, suppressing the hadolint rule
 # hadolint ignore=DL3029

.devcontainer/create-aws-profile.sh

@@ -26,3 +26,10 @@ cat >> ~/.aws/credentials <<EOF
 aws_access_key_id=test
 aws_secret_access_key=test
 EOF
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.devcontainer/devcontainer.json

@@ -57,5 +57,5 @@
   "initializeCommand": "sh .devcontainer/initialize-command.sh",
   "onCreateCommand": "sh .devcontainer/on-create-command.sh",
   "postStartCommand": "sh .devcontainer/post-start-command.sh"
-  // Devcontainer context hash (do not manually edit this, it's managed by a pre-commit hook): 497c90af # spellchecker:disable-line
+  // Devcontainer context hash (do not manually edit this, it's managed by a pre-commit hook): e480eb4b # spellchecker:disable-line
 }

.devcontainer/docker-compose.yml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 services:
   devcontainer:
     # added the platform flag to override any local settings since this image is only compatible with linux/amd64.

.devcontainer/initialize-command.sh

@@ -6,3 +6,10 @@ printenv
 if [ -n "$CODESPACES" ] && [ "$CODESPACES" = "true" ]; then
     docker image prune --all --force
 fi
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.devcontainer/install-ci-tooling.py

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 import argparse
 import os
 import platform

.devcontainer/manual-setup-deps.py

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 import argparse
 import json
 import os

.devcontainer/on-create-command-boilerplate.sh

@@ -7,3 +7,10 @@ git config --global --add --bool push.autoSetupRemote true
 git config --local core.symlinks true
 
 sh .devcontainer/create-aws-profile.sh
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.devcontainer/on-create-command.sh

@@ -20,3 +20,10 @@ npm install -g @beads/bd@0.57.0 # no specific reason for this version, just pinn
 pre-commit install --install-hooks
 
 python .devcontainer/manual-setup-deps.py --optionally-check-lock --allow-uv-to-install-python
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.devcontainer/post-start-command.sh

@@ -14,3 +14,10 @@ if ! bd ready; then
     # for some reason, the envvar for the server host isn't being picked up normally, so just passing it explicitly here
     rm -rf .claude/.beads && bd init --server-host="$BEADS_DOLT_SERVER_HOST" --database="$BEADS_DOLT_SERVER_DATABASE" --skip-hooks --stealth --prefix=work </dev/null && git -c core.hooksPath=/dev/null restore --source=HEAD --staged --worktree .claude/.beads
 fi
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.devcontainer/windows-host-helper.sh

@@ -54,3 +54,10 @@ rm -rf "$tmpdir"
 
 echo "Repository '$repoName' has been updated."
 echo "Note: Volume mounts (node_modules, .pnpm-store, .venv) were preserved."
+
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================

.github/actions/check-skip-duplicates/action.yml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: Check Skip Duplicates
 description: 'Check that will output a variable to allow you to skip duplicate runs. Example: If you have both push and pull_request triggers enabled and you dont want to run 2 jobs for the same commit if a PR is already open you can add this to your jobs to skip that extra execution.'
 

.github/actions/install_deps/action.yml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: Install requirements
 description: Setup Python and/or Node, and install dependencies based on the devcontainer specification
 inputs:

.github/actions/update-devcontainer-hash/action.yml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: Update Devcontainer Hash
 
 inputs:

.github/dependabot.yml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 version: 2
 updates:
   - package-ecosystem: "devcontainers"

.github/pull_request_template.md

@@ -19,3 +19,12 @@
 
 
 ## Other
+
+<!--
+============== WARNING ==============================================================================
+File is managed by a copier template. See .copier-managed-files.json for details.
+
+You are welcome to make changes to this file in your repo if they are custom to your project,
+but if the change should be shared with other projects, please backport it to the template repo.
+=====================================================================================================
+-->

.github/reusable_workflows/build-docker-image.yaml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: Build Docker Image
 
 on:

.github/workflows/ci.yaml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: CI
 
 on:

.github/workflows/confirm-on-tagged-copier-template.yaml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: Confirm using tagged copier template version
 
 on:

.github/workflows/get-values.yaml

@@ -1,3 +1,9 @@
+# ============== WARNING ==============================================================================
+# File is managed by a copier template. See .copier-managed-files.json for details.
+#
+# You are welcome to make changes to this file in your repo if they are custom to your project,
+# but if the change should be shared with other projects, please backport it to the template repo.
+# =====================================================================================================
 name: Get Values
 
 on: