Add CTF estimation program - #5
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PICASSO now reports 2D defocus/astigmatism and a 1D thickness fit (grid plus thickness-only Adam) without jointly refining defocus with ice. Co-authored-by: Cursor <cursoragent@cursor.com>
Keep the 1D→2D defocus route and thickness-only refine in the program docs, and note that thickness is a CTF_t number rather than a CTFFind match. Co-authored-by: Cursor <cursoragent@cursor.com>
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Summary
programs/ctf_estimationto run 1D → 2D defocus/astigmatism, then a 1D thickness grid and thickness-only Adam, viatorch-ctf-estimation.refine_dim: "thickness").images_per_device).Test plan
uv run --no-sync python -m pytest tests/test_ctf_estimate.py(estimate tests passed)uv run --no-sync python programs/ctf_estimation/run_ctf_estimation.pywith the example YAML pointed at a local MRCtorch-ctf-estimationis available (local editable path or the TeamTomo package)Left out of this PR:
test_datasets/(local no-laser experiment data) anduv.lock.Made with Cursor