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Improve array retrieval function #160

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f33f321
add draft for volcanoplot wrapper function
vbrennsteiner Nov 14, 2025
852eb9e
Merge branch 'main' into volcanoplot_wrapper
vbrennsteiner Nov 21, 2025
281bc4f
Merge branch 'main' into volcanoplot_wrapper
vbrennsteiner Jan 15, 2026
63d1894
refactor volcanoplot wrapper to use anndata and dataframe inputs, ext…
vbrennsteiner Jan 15, 2026
cb0ed49
Merge branch 'main' into volcanoplot_wrapper
vbrennsteiner Jan 15, 2026
ee93e3b
Merge branch 'main' into volcanoplot_wrapper
vbrennsteiner Jan 19, 2026
87a5526
updated notebook structure
vbrennsteiner Jan 19, 2026
23fe98a
refactor volcanoplot
vbrennsteiner Jan 21, 2026
6bc9ff1
extend data_column_to_array
vbrennsteiner Jan 21, 2026
fa5f437
adapt data_column_to_array to use index by default
vbrennsteiner Jan 21, 2026
acf6851
Merge branch 'main' into improve_array_retrieval_function
vbrennsteiner Feb 23, 2026
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16 changes: 15 additions & 1 deletion docs/notebooks/studies/study_01_biomarker_csf.ipynb
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Expand Up @@ -64,7 +64,21 @@
"name": "stdout",
"output_type": "stream",
"text": [
"./datasets/data_for_02_basic_analysis/report.parquet already exists (91.135817527771 MB)\n"
"./datasets/data_for_02_basic_analysis/report.parquet does not yet exist\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"100% |########################################################################|\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"./datasets/data_for_02_basic_analysis/report.parquet successfully downloaded (91.135817527771 MB)\n"
]
},
{
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