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Update TS1 config file #1044

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Update TS1 config file #1044

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53b2138
updating to t1s2
K20shores Sep 9, 2026
b0c781d
correcting photoylsis names
K20shores Sep 9, 2026
cd9bd4f
Fix T1S2 photolysis names, add het1-17 and aerosol surface reactions,…
K20shores Sep 9, 2026
1ef3c55
Add usr_CO_OH as a zero-rate USER_DEFINED placeholder; documents the …
K20shores Sep 9, 2026
10d504b
Point ts1 tutorials to t1s2.json and fix a codespell false positive.
K20shores Sep 10, 2026
c07a8fb
correcting coefficient for 2H2O+SO3 rxn
K20shores Sep 10, 2026
a5896d9
correcting product name, coefficient
K20shores Sep 10, 2026
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2 changes: 1 addition & 1 deletion configs/miem/cams_finn_all_species_emissions_config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
# individual sector variables -- "_sum" aggregates more sectors than just
# those.
#
# BC/OC have no gas-phase representation in ts1.json, so they get real miem
# BC/OC have no gas-phase representation in t1s2.json, so they get real miem
# flux but no MICM Emission reaction (flux-only, no concentration curve).
version: 1.0.0
species: []
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6 changes: 3 additions & 3 deletions configs/v1/miem_nox/mechanism.json
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"name": "miem NOx box model",
"version": "1.0.0",
"__description": "A small, purpose-built mechanism for the fortran/examples and python/musica/examples miem_nox_box_model* demos -- just enough chemistry to show a miem-driven EMISSION reaction feeding a real NOx/O3 photostationary-state signature, without splicing reactions into (or dragging in the other ~1400 reactions of) the real TS1 mechanism. The jno2 photolysis rate and the NO + O3 Arrhenius parameters are taken directly from configs/v1/ts1/ts1.json (real, validated values); the photolysis step lumps the real NO2 + hv -> NO + O(3P) followed by the fast O(3P) + O2 + M -> O3 into a single NO2 -> NO + O3 step, since O(3P)/O2/M aren't tracked here.",
"__description": "A small, purpose-built mechanism for the fortran/examples and python/musica/examples miem_nox_box_model* demos -- just enough chemistry to show a miem-driven EMISSION reaction feeding a real NOx/O3 photostationary-state signature, without splicing reactions into (or dragging in the other ~1400 reactions of) the real TS1 mechanism. The jno2 photolysis rate and the NO + O3 Arrhenius parameters are taken directly from configs/v1/ts1/t1s2.json (real, validated values); the photolysis step lumps the real NO2 + hv -> NO + O(3P) followed by the fast O(3P) + O2 + M -> O3 into a single NO2 -> NO + O3 step, since O(3P)/O2/M aren't tracked here.",
"species": [
{
"name": "NO"
Expand Down Expand Up @@ -29,7 +29,7 @@
"type": "PHOTOLYSIS",
"name": "jno2",
"scaling factor": 1.0,
"__reaction": "NO2 + hv -> NO + O3 (lumped; real jno2 rate from ts1.json)",
"__reaction": "NO2 + hv -> NO + O3 (lumped; real jno2 rate from t1s2.json)",
"reactants": [
{ "species name": "NO2", "coefficient": 1.0 }
],
Expand All @@ -41,7 +41,7 @@
},
{
"type": "ARRHENIUS",
"__reaction": "NO + O3 -> NO2 (+ O2, untracked); rate constant from ts1.json",
"__reaction": "NO + O3 -> NO2 (+ O2, untracked); rate constant from t1s2.json",
"A": 1806642.228,
"B": 0.0,
"C": -1500.0,
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26 changes: 9 additions & 17 deletions configs/v1/ts1/initial_conditions.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -329,23 +329,6 @@ PHOTO.jsoa4_a1,1.0e-20
PHOTO.jsoa4_a2,1.0e-20
PHOTO.jsoa5_a1,1.0e-20
PHOTO.jsoa5_a2,1.0e-20
USER.het1,1.0E-20
USER.het2,1.0E-20
USER.het3,1.0E-20
USER.het4,6.022140760000E-03
USER.het5,6.022140760000E-03
USER.het6,6.022140760000E-03
USER.het7,1.0E-20
USER.het8,1.0E-20
USER.het9,6.022140760000E-03
USER.het10,6.022140760000E-03
USER.het11,1.0E-20
USER.het12,1.0E-20
USER.het13,1.0E-20
USER.het14,1.0E-20
USER.het15,6.022140760000E-03
USER.het16,6.022140760000E-03
USER.het17,6.022140760000E-03
SURF.usr_NO2_aer,2.820947917738780E-08,1.0e11
SURF.usr_HO2_aer,2.820947917738780E-08,1.0e11
SURF.usr_NO3_aer,2.820947917738780E-08,1.0e11
Expand All @@ -359,5 +342,14 @@ SURF.usr_NC4CHO_aer,2.820947917738780E-08,1.0e11
SURF.usr_TERPNIT_aer,2.820947917738780E-08,1.0e11
SURF.usr_NTERPOOH_aer,2.820947917738780E-08,1.0e11
SURF.usr_NC4CH2OH_aer,2.820947917738780E-08,1.0e11
SURF.het7,1.0e-07,0.0
SURF.het8,1.0e-07,0.0
SURF.het11,1.0e-07,0.0
SURF.het12,1.0e-07,0.0
SURF.het13,1.0e-07,0.0
SURF.het14,1.0e-07,0.0
SURF.het1,1.0e-07,0.0
SURF.het2,1.0e-07,0.0
SURF.het3,1.0e-07,0.0
ENV.temperature,287.45
ENV.pressure,101319.9
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