Add a new Knowledge-Based Analysis tab#2

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MA-Tianrui wants to merge 21 commits intoNesvilab:mainfrom

MA-Tianrui:knowledge_based_analysis

Commits on Feb 20, 2026

add a local clusterProfiler option for enrichment analysis

MA-Tianrui
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Ma
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Update the local enrichment option with clusterProfiler

MA-Tianrui
authored and
Ma
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update local enrichment as a global option

MA-Tianrui
authored and
Ma
committed

Commits on Mar 6, 2026

add Knowledge Based Analysis tab providing a downstream dashboard after DE analysis with volcano, ORA, GSVA, and network panels
Ma
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Commits on Mar 11, 2026

Commits on Mar 12, 2026

Commits on Mar 13, 2026

Improve layout and UI of ORA heatmap
MA-Tianrui
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Commits on Mar 17, 2026

Add PTM-SEA database to gene set explorer tab for PTM site dataset
MA-Tianrui
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Commits on Mar 19, 2026

Improve the PPI network
MA-Tianrui
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Commits on Mar 20, 2026

Enhance network analysis: kinase-substrate network, other improvements
MA-Tianrui
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Commits on Mar 27, 2026

Improve kinase-substrate network
MA-Tianrui
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Commits on Mar 31, 2026

Commits on Apr 1, 2026

Improve gene set explorer
MA-Tianrui
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Commits on Apr 2, 2026

Fix some issues in kinase-substrate network
MA-Tianrui
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Commits on Apr 10, 2026

Implement the Z-score method for kinase activity inference
MA-Tianrui
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Commits on Apr 15, 2026

Fit the z-score activity inference results to KS network
MA-Tianrui
committed