Generate HTML summary reports for FragPipe results.
FragSummarizer scans a FragPipe output directory and produces a single self-contained HTML report with identification counts, mass error distributions, peptide/charge/missed-cleavage distributions, runtime breakdowns, Percolator feature weights, and MSBooster plots.
- Java 11 or later
- Maven 3.6+ (for building from source)
mvn clean packageThe shaded, runnable JAR is written to target/FragSummarizer-<version>.jar.
java -jar target/FragSummarizer-1.0.1.jar -r <fragpipe_results_path>| Flag | Description |
|---|---|
-r, --results_path |
Path to the FragPipe results directory |
The report is written inside the results directory.
Licensed under the Apache License, Version 2.0.