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BF Update mmraux.py #59

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BF Update mmraux.py #59

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8c9e6bb
BF Update mmraux.py
OliJimbo Feb 21, 2025
ab9dcd1
Update mmrimg.py
OliJimbo Feb 21, 2025
cba03cd
Update mmrnorm.py
OliJimbo Feb 25, 2025
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2 changes: 1 addition & 1 deletion niftypet/nipet/img/mmrimg.py
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Original file line number Diff line number Diff line change
Expand Up @@ -745,7 +745,7 @@ def hdr_mu(datain, Cnt):
else:
raise NameError('no DICOM or DICOM filed <CSA Series Header Info> found!')
if os.path.isfile(dcmf):
dhdr = dcm.read_file(dcmf)
dhdr = dcm.dcmread(dcmf)
else:
log.error('DICOM mMR mu-maps are not valid files!')
return None
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12 changes: 6 additions & 6 deletions niftypet/nipet/mmraux.py
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Original file line number Diff line number Diff line change
Expand Up @@ -36,9 +36,9 @@ def fwhm2sig(fwhm):
def lm_pos(datain, Cnt):
'''get the position of table and gantry offset from the DICOM list-mode file'''
if 'lm_dcm' in datain and os.path.isfile(datain['lm_dcm']):
dhdr = dcm.read_file(datain['lm_dcm'])
dhdr = dcm.dcmread(datain['lm_dcm'])
elif 'lm_ima' in datain and os.path.isfile(datain['lm_ima']):
dhdr = dcm.read_file(datain['lm_ima'])
dhdr = dcm.dcmread(datain['lm_ima'])
else:
log.error('DICOM list-mode data not found!')
return None
Expand Down Expand Up @@ -91,9 +91,9 @@ def lm_pos(datain, Cnt):
def hdr_lm(datain, Cnt):
'''Get the headers from DICOM list-mode data file'''
if 'lm_dcm' in datain and os.path.isfile(datain['lm_dcm']):
dhdr = dcm.read_file(datain['lm_dcm'])
dhdr = dcm.dcmread(datain['lm_dcm'])
elif 'lm_ima' in datain and os.path.isfile(datain['lm_ima']):
dhdr = dcm.read_file(datain['lm_ima'])
dhdr = dcm.dcmread(datain['lm_ima'])
else:
log.error('DICOM list-mode data not found!')
return None
Expand Down Expand Up @@ -226,9 +226,9 @@ def hmu_resample0(hmupos, parts, Cnt):

def time_diff_norm_acq(datain):
if 'lm_dcm' in datain and os.path.isfile(datain['lm_dcm']):
dcm_lm = dcm.read_file(datain['lm_dcm'])
dcm_lm = dcm.dcmread(datain['lm_dcm'])
elif 'lm_ima' in datain and os.path.isfile(datain['lm_ima']):
dcm_lm = dcm.read_file(datain['lm_ima'])
dcm_lm = dcm.dcmread(datain['lm_ima'])
else:
log.error('dicom header of list-mode data does not exist.')
return None
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2 changes: 1 addition & 1 deletion niftypet/nipet/mmrnorm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,7 @@ def get_components(datain, Cnt):
# possible DICOM locations for the Interfile header
nhdr_locations = [[0x29, 0x1010], [0x29, 0x1110]]
# read the DICOM file
d = dcm.read_file(fnrm_hdr)
d = dcm.dcmread(fnrm_hdr)

# if d[0x0018, 0x1020].value == 'syngo MR B20P' or d[0x0018, 0x1020].value == 'syngo MR E11':
# nhdr = d[0x29,0x1010].value.decode()
Expand Down