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Update list of sequencers for poly-g trimming #508

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Merged
sfchen merged 3 commits into from
Jan 20, 2026
Merged

Update list of sequencers for poly-g trimming #508

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bb4ed45
Expand two-color SBS definitions
semenko Jul 14, 2023
00c3657
Merge branch 'OpenGene:master' into expand-polyg-trimming
semenko Jan 19, 2026
b3c14e0
Improve and expand sequencer list for poly-g trimming
semenko Jan 19, 2026
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9 changes: 7 additions & 2 deletions src/evaluator.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -21,8 +21,13 @@ bool Evaluator::isTwoColorSystem() {
if(!r)
return false;

// NEXTSEQ500, NEXTSEQ 550/550DX, NOVASEQ
if(starts_with(r->mName, "@NS") || starts_with(r->mName, "@NB") || starts_with(r->mName, "@NDX") || starts_with(r->mName, "@A0")) {
// Via https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003880
// NEXTSEQ 500/550: @NS @NB
// ? NEXTSEQ 550DX: @NDX
// NEXTSEQ 1000/2000: @VL @VH
// NOVASEQ 6000: @A
// NOVASEQ X PLUS: @LH
if(starts_with(r->mName, "@NS") || starts_with(r->mName, "@NB") || starts_with(r->mName, "@NDX") || starts_with(r->mName, "@VL") || starts_with(r->mName, "@VH") || starts_with(r->mName, "@A") || starts_with(r->mName, "@LH")) {
delete r;
return true;
}
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