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2.x bids-validator #717

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0a76f02
install of deno 2.x bids-validator
bpinsard Mar 11, 2026
1fea55f
apply suggested fixes
bpinsard Apr 15, 2026
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56 changes: 37 additions & 19 deletions neurodocker/templates/bids_validator.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ binaries:
1.11.0: https://github.com/bids-standard/bids-validator/releases/tag/v1.11.0
1.10.0: https://github.com/bids-standard/bids-validator/releases/tag/v1.10.0
1.9.0: https://github.com/bids-standard/bids-validator/releases/tag/v1.10.0
2.4.1: https://github.com/bids-standard/bids-validator/releases/tag/2.4.1
arguments:
required:
- version
Expand All @@ -19,26 +20,43 @@ binaries:
- curl
- apt-utils
- gnupg
- jq
- unzip
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yum:
- curl
- unzip
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- jq
# see install for node https://github.com/nodesource/distributions#installation-scripts
instructions: |
if [ ! -z `which node` ] ; then \
echo "node is installed, skipping its install." ; \
else \
{%- if self.version.split('.')[0] | int < 2 %} \
if [ ! -z `which node` ] ; then \
echo "node is installed, skipping its install." ; \
else \
{{ self.install_dependencies() }}
{%- if self.pkg_manager == "apt" %}
curl -SLO https://deb.nodesource.com/nsolid_setup_deb.sh
chmod 500 nsolid_setup_deb.sh
./nsolid_setup_deb.sh {{ self.node_version }}
{{ self.install(["nodejs"]) }} ; \
{% elif self.pkg_manager == "yum" %}
curl -SLO https://rpm.nodesource.com/nsolid_setup_rpm.sh
chmod 500 nsolid_setup_rpm.sh
./nsolid_setup_rpm.sh {{ self.node_version }}
{{ self.install(["nodejs --setopt=nodesource-nodejs.module_hotfixes=1"]) }} ; \
{% endif -%}
fi ; \
node --version
npm --version
npm install -g bids-validator@{{ self.version }} ; \
{% else %} \
{{ self.install_dependencies() }}
{%- if self.pkg_manager == "apt" %}
curl -SLO https://deb.nodesource.com/nsolid_setup_deb.sh
chmod 500 nsolid_setup_deb.sh
./nsolid_setup_deb.sh {{ self.node_version }}
{{ self.install(["nodejs"]) }} ; \
{% elif self.pkg_manager == "yum" %}
curl -SLO https://rpm.nodesource.com/nsolid_setup_rpm.sh
chmod 500 nsolid_setup_rpm.sh
./nsolid_setup_rpm.sh {{ self.node_version }}
{{ self.install(["nodejs --setopt=nodesource-nodejs.module_hotfixes=1"]) }} ; \
{% endif -%}
fi
node --version
npm --version
npm install -g bids-validator@{{ self.version }}
curl -fsSL https://deno.land/install.sh | DENO_INSTALL=/usr/local sh
curl -L https://github.com/bids-standard/bids-validator/archive/refs/tags/{{ self.version }}.tar.gz | tar -xz
cd bids-validator-{{ self.version }}
jq -r ".version|=\"{{ self.version }}\"" deno.json > ._deno.json
mv ._deno.json deno.json
deno run -A ./build.ts
cp dist/validator/bids-validator.js /usr/bin/bids-validator.js
echo 'deno -A /usr/bin/bids-validator.js "$@"' > /usr/bin/bids-validator
chmod +x /usr/bin/bids-validator
cd .. && rm -rf "bids-validator-{{ self.version }}"
{% endif -%}
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