Address Review Comments

.github/workflows/draft-pdf.yml

@@ -0,0 +1,35 @@
+name: Draft PDF
+
+on:
+  push:
+    paths:
+    - paper/**
+    - .github/workflows/draft-pdf.yml
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+    - name: Build draft PDF
+      uses: openjournals/openjournals-draft-action@master
+      with:
+        journal: joss
+        # This should be the path to the paper within your repo.
+        paper-path: paper/paper.md
+    - name: Upload
+      uses: actions/upload-artifact@v4
+      with:
+        name: paper
+        # This is the output path where Pandoc will write the compiled
+        # PDF. Note, this should be the same directory as the input
+        # paper.md
+        path: paper/paper.pdf
+    - name: Commit PDF to repository
+      uses: EndBug/add-and-commit@v9
+      with:
+        message: '(auto) Paper PDF Draft'
+        # This should be the path to the paper within your repo.
+        add: 'paper/paper.pdf'

.gitignore

@@ -20,3 +20,4 @@ tests/data/*.o
 /docs/
 /inst/doc
 /Meta/
+/paper/Figures/.Rhistory

DESCRIPTION

@@ -1,36 +1,35 @@
 Package: MCSimMod
 Title: Working with 'MCSim' Models
-Version: 0.9.1.9000
+Version: 1.0
 Authors@R: c(
- person("Dustin F.", "Kapraun", role=c("aut", "cre"), email = "kapraun.dustin@epa.gov", comment = c(ORCID = "0000-0001-5570-6383")),
-	person("Todd J.", "Zurlinden", role="aut", comment = c(ORCID = "0000-0003-1372-3913")),
-	person("Andrew J.", "Shapiro", role="aut", comment = c(ORCID = "0000-0002-5233-8092")),
-	person("Ryan D.", "Friese", role="aut", comment = c(ORCID = "0000-0002-4121-2195")),
-	person("Frederic Y.", "Bois", role="ctb", comment = c(ORCID = " 0000-0002-4154-0391")),
-	person("Free Software Foundation, Inc.", role="cph")
-	)
+  person("Dustin F.", "Kapraun", role=c("aut", "cre"), email = "kapraun.dustin@epa.gov", comment = c(ORCID = "0000-0001-5570-6383")),
+  person("Todd J.", "Zurlinden", role="aut", comment = c(ORCID = "0000-0003-1372-3913")),
+  person("Andrew J.", "Shapiro", role="aut", comment = c(ORCID = "0000-0002-5233-8092")),
+  person("Ryan D.", "Friese", role="aut", comment = c(ORCID = "0000-0002-4121-2195")),
+  person("Frederic Y.", "Bois", role="ctb", comment = c(ORCID = " 0000-0002-4154-0391")),
+  person("Free Software Foundation, Inc.", role="cph")
+  )
 Description: Tools that facilitate ordinary differential equation (ODE) modeling in 'R'. This package allows one to perform simulations for ODE models that are encoded in the GNU 'MCSim' model specification language (Bois, 2009) <doi:10.1093/bioinformatics/btp162> using ODE solvers from the 'R' package 'deSolve' (Soetaert et al., 2010) <doi:10.18637/jss.v033.i09>.
-Depends:
-	methods,
-	tools
 Imports:
-    deSolve
+  deSolve,
+  methods,
+  tools
 URL: https://CRAN.R-project.org/package=MCSimMod, https://github.com/USEPA/MCSimMod
 License: GPL-3
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.2
 Suggests:
-    knitr,
-    rmarkdown,
-    testthat (>= 3.0.0)
+  knitr,
+  rmarkdown,
+  testthat (>= 3.0.0)
 Config/Needs/dev:
-    devtools,
-    styler (== 1.10.3),
-    testthat,
-    covr
+  devtools,
+  styler (== 1.10.3),
+  testthat,
+  covr
 Config/Needs/website:
-    r-lib/pkgdown
+  r-lib/pkgdown
 Config/testthat/edition: 3
 VignetteBuilder: knitr