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Clipping introduces Ns that affects the read filtering

Status: Open.

Bug

#189 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 6, 2026

tests: updates and to do

Status: Open.

#184 In bbglab/deepUMIcaller;

· m-huertasp opened on Apr 9, 2026

Suggestion: re-work pipeline to use mimimap2 instead of bwa

Status: Open.

#182 In bbglab/deepUMIcaller;

· bkohrn opened on Apr 3, 2026

Reimplement AS-XS filtering

Status: Open.

#166 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Nov 7, 2025

·  

v1.2.0

fix memory issues in coverageglobal

Status: Open.

#151 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Oct 7, 2025

·  

v1.2.0

Force parent_dna to be different from all individual sample names

Status: Open.

#130 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Aug 27, 2025

Create python container for deepUMIcaller

Highhigh priorityhigh priority

Status: Open.

Task

#114 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Jun 3, 2025

·  

v1.2.0

Add step to check for interspecies contamination

Status: Open.

#111 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 24, 2025

Update containers

Status: Open.

#109 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 22, 2025

Improve mutation QC reporting

Status: Open.

#103 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 15, 2025

Indel calling

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#91 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Mar 13, 2025

Add VAF distorsion filter

Status: Open.

#74 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Sep 16, 2024