release-0.7.0

Christophe Becavin (33):
      Merge pull request #18 from becavin-lab/main
      Merge pull request #19 from becavin-lab/main
      Merge pull request #1 from AntoineCollin/main
      Update README.md
      Merge pull request #20 from becavin-lab/main
      Update README.md
      Update README.md
      Update README.md
      Merge pull request #21 from becavin-lab/main
      Add analysis notebook
      Prepare review
      Add logger in python code
      Add versioning
      Add new datasets download
      Save task1 scripts in obsolete folder
      Fix benchmark script in experiment_script, Fix training_scheme_8 with classifier freeze not working, freeze.py was change. Transfer works now for training_scheme_8
      Updating task1 scripts
      Update task1 for all models
      Modify task1 for all models
      Move task2 scripts to task2 folder and rename files, + add single sbatch running for each model
      Move task1 scripts to task1/ folkder and rename scripts
      Fix task1 and move to folder, move hp_optim to folder task0, create paper_review folder and put scripts to detect unrun sbatch for benchmark
      Update figure generation scripts with antigravity
      Big update of task1 and task2. Figure generation updated. scripts added for new datasets
      Add UCE preprocessing for new datasets
      Adding new datasets and running task1 and task2. Ttrying to reproduce reviewer jupyternotebook: failed! Add SmallIntestine to list of new datasets. Running all new tasks and generated new figures
      Completed new benchmark with new datasets for second review.
      Merge pull request #2 from becavin-lab/review_old
      Big parsing of scmusk transfer, cleaning logs, add scMusk embedding save
      Remove unecessary metric calculation, clean logs
      Clean logs
      Update dependencies
      release: version 0.7.0 🚀

Christophe Bécavin (5):
      Modify doc
      Revert "Add analysis notebook"
      Add notebooks
      Create supp tables
      Before review

release-0.4.2

Christophe Becavin (7):
      Update README.md
      Update README.md
      Update README.md
      Update README.md
      Update README.md
      Update README.md
      Update README.md

Christophe Bécavin (3):
      Fix __init__ and add figure
      Update the documentation
      release: version 0.4.2 🚀

release-0.4.1

Christophe Bécavin (1):
      release: version 0.4.1 🚀

release-0.4.0

Christophe Becavin (2):
      Merge pull request #17 from becavin-lab/main
      Merge branch 'AntoineCollin:main' into main

Christophe Bécavin (5):
      Fix tutorial
      Remove torch and ax-platform from normal dependencies. axPlatofrm has been moved to poetry.workflow
      Fix poetry.lock
      Moved all sc tools for workflow and benchmark to poetry.workflow
      release: version 0.4.0 🚀

release-0.3.7

Christophe Bécavin (2):
      put scheme_13
      release: version 0.3.7 🚀

release-0.3.6

Christophe Bécavin (1):
      release: version 0.3.6 🚀

release-0.3.5

Christophe Bécavin (1):
      release: version 0.3.5 🚀

release-0.3.4

Christophe Bécavin (3):
      Fix many dependencies
      Formatcode for linting
      release: version 0.3.4 🚀

release-0.3.3

Christophe Bécavin (2):
      Fix str2bool import
      release: version 0.3.3 🚀

release-0.3.2

Christophe Bécavin (1):
      release: version 0.3.2 🚀