ENH: Make ./run_tests.sh to optionally store bids-validator outputs under derivatives/bids-validator

2d_mb_pcasl/derivatives/bids-validator/info.json

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+{
+  "validator_version": "2.4.1",
+  "duration": 1
+}

2d_mb_pcasl/derivatives/bids-validator/output.txt

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+	[WARNING] JSON_KEY_RECOMMENDED A JSON file is missing a key listed as recommended.
+		HEDVersion
+		/dataset_description.json - Field description: If HED tags are used:
+The version of the HED schema used to validate HED tags for study.
+May include a single schema or a base schema and one or more library schema.
+
+		License
+		/dataset_description.json - Field description: The license for the dataset.
+The use of license name abbreviations is RECOMMENDED for specifying a license
+(see ]8;;https://bids-specification.readthedocs.io/en/stable/appendices/licenses.mdLicenses]8;;).
+The corresponding full license text MAY be specified in an additional
+LICENSE file.
+
+		GeneratedBy
+		/dataset_description.json - Field description: Used to specify provenance of the dataset.
+
+		SourceDatasets
+		/dataset_description.json - Field description: Used to specify the locations and relevant attributes of all source datasets (BIDS or not).
+Valid keys in each object include "URL", "DOI" (see
+]8;;https://bids-specification.readthedocs.io/en/stable/common-principles.md#uniform-resource-indicatorURI]8;;), and
+"Version" with
+]8;;https://www.w3schools.com/js/js_json_datatypes.aspstring]8;;
+values.
+
+	Please visit https://neurostars.org/search?q=JSON_KEY_RECOMMENDED for existing conversations about this issue.
+
+	[WARNING] SIDECAR_KEY_RECOMMENDED A data file's JSON sidecar is missing a key listed as recommended.
+		DeviceSerialNumber
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: The serial number of the equipment that produced the measurements.
+A pseudonym can also be used to prevent the equipment from being
+identifiable, so long as each pseudonym is unique within the dataset.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: The serial number of the equipment that produced the measurements.
+A pseudonym can also be used to prevent the equipment from being
+identifiable, so long as each pseudonym is unique within the dataset.
+
+		2 more files with the same issue
+
+		StationName
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: Institution defined name of the machine that produced the measurements.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: Institution defined name of the machine that produced the measurements.
+
+		2 more files with the same issue
+
+		PulseSequenceType
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: A general description of the pulse sequence used for the scan.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: A general description of the pulse sequence used for the scan.
+
+		2 more files with the same issue
+
+		NonlinearGradientCorrection
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: Boolean stating if the image saved has been corrected for gradient
+nonlinearities by the scanner sequence.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: Boolean stating if the image saved has been corrected for gradient
+nonlinearities by the scanner sequence.
+
+		2 more files with the same issue
+
+		SpoilingType
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: Specifies which spoiling method(s) are used by a spoiled sequence.
+
+		PartialFourierDirection
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: The direction where only partial Fourier information was collected.
+Corresponds to ]8;;http://www.dicomlookup.com/dicomtags/(0018,9036)DICOM Tag 0018, 9036]8;;
+Partial Fourier Direction.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: The direction where only partial Fourier information was collected.
+Corresponds to ]8;;http://www.dicomlookup.com/dicomtags/(0018,9036)DICOM Tag 0018, 9036]8;;
+Partial Fourier Direction.
+
+		2 more files with the same issue
+
+		InstitutionName
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: The name of the institution in charge of the equipment that produced the
+measurements.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: The name of the institution in charge of the equipment that produced the
+measurements.
+
+		2 more files with the same issue
+
+		InstitutionAddress
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: The address of the institution in charge of the equipment that produced the
+measurements.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: The address of the institution in charge of the equipment that produced the
+measurements.
+
+		2 more files with the same issue
+
+		InstitutionalDepartmentName
+		/sub-1/anat/sub-1_T1w.nii.gz - Field description: The department in the institution in charge of the equipment that produced
+the measurements.
+		/sub-1/fmap/sub-1_dir-AP_epi.nii.gz - Field description: The department in the institution in charge of the equipment that produced
+the measurements.
+
+		2 more files with the same issue
+
+		VascularCrushing
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: Boolean indicating if Vascular Crushing is used.
+Corresponds to ]8;;http://www.dicomlookup.com/dicomtags/(0018,9259)DICOM Tag 0018, 9259]8;;
+ASL Crusher Flag.
+
+		LabelingOrientation
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: Orientation of the labeling plane ((P)CASL) or slab (PASL).
+The direction cosines of a normal vector perpendicular to the ASL labeling
+slab or plane with respect to the patient.
+Corresponds to ]8;;http://www.dicomlookup.com/dicomtags/(0018,9255)DICOM Tag 0018, 9255]8;;
+ASL Slab Orientation.
+
+		LabelingDistance
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: Distance from the center of the imaging slab to the center of the labeling
+plane ((P)CASL) or the leading edge of the labeling slab (PASL),
+in millimeters.
+If the labeling is performed inferior to the isocenter,
+this number should be negative.
+Based on DICOM macro C.8.13.5.14.
+
+		LabelingLocationDescription
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: Description of the location of the labeling plane ("CASL" or "PCASL") or
+the labeling slab ("PASL") that cannot be captured by fields
+LabelingOrientation or LabelingDistance.
+May include a link to a deidentified screenshot of the planning of the
+labeling slab/plane with respect to the imaging slab or slices
+*_asllabeling.*.
+Based on DICOM macro C.8.13.5.14.
+
+		LabelingPulseAverageGradient
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: The average labeling gradient, in milliteslas per meter.
+
+		LabelingPulseMaximumGradient
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: The maximum amplitude of the gradient switched on during the application of
+the labeling RF pulse(s), in milliteslas per meter.
+
+		LabelingPulseAverageB1
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: The average B1-field strength of the RF labeling pulses, in microteslas.
+As an alternative, "LabelingPulseFlipAngle" can be provided.
+
+		LabelingPulseDuration
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: Duration of the individual labeling pulses, in milliseconds.
+
+		LabelingPulseFlipAngle
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: The flip angle of a single labeling pulse, in degrees,
+which can be given as an alternative to "LabelingPulseAverageB1".
+
+		LabelingPulseInterval
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: Delay between the peaks of the individual labeling pulses, in milliseconds.
+
+		PCASLType
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: The type of gradient pulses used in the control condition.
+
+		MatrixCoilMode
+		/sub-1/perf/sub-1_asl.nii.gz - Field description: (If used)
+A method for reducing the number of independent channels by combining in
+analog the signals from multiple coil elements.
+There are typically different default modes when using un-accelerated or
+accelerated (for example, "GRAPPA", "SENSE") imaging.
+
+	Please visit https://neurostars.org/search?q=SIDECAR_KEY_RECOMMENDED for existing conversations about this issue.
+
+
+          Summary:                         Available Tasks:        Available Modalities:
+          11 Files, 13.9 kB                                        MRI                  
+          1 - Subjects 1 - Sessions                                                     
+

7t_trt/derivatives/bids-validator/info.json

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+{
+  "validator_version": "2.4.1",
+  "duration": 2
+}