[WIP] Add support for experimental design aggregation - #724

Draft

leej3 wants to merge 38 commits into

mainfrom

add_design_aggregator

Commits on May 11, 2021

add initial prototype of design aggregation tool
leej3
committed
27c21bf
tidy arg parsing
leej3
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bc6cd91
move get_events_collection_to variables.io
Shotgunosine
committed
bba5284
fix data path during testing
leej3
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0d2a888
fix event file reading
leej3
committed
4e41306

Commits on May 12, 2021

tidy get_events_collection
leej3
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14d32df
move loading of regressor into function
leej3
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0fb031b
move loading of phys and stim files into function
leej3
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8ba2902
output sampling rate not needed for reading input
leej3
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605c2c0
move source logic out of get_rec_collection
leej3
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b115bc0
will not drop na in records or reg collections for now
leej3
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63f84a5
use tempdir for output during test
leej3
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1ee5de1
remove output-tsv arg and start sparse/dense saving
leej3
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31776fa
have tfm manager check for densification or deletion of sparse variables
Shotgunosine
committed
bc39cd6

Commits on May 13, 2021

parametrize tests
leej3
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044386b
remove stutter
leej3
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ae83df9
add test for sampling rate with associated fix
leej3
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a8fb923
move test output to the pytest temp dir
leej3
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ce7a50b
oops
leej3
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810f29e
consider the sparse variables
leej3
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76c0c54
correct indentation bug
leej3
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a2fba92
update TODOs
leej3
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4a6dac0
fix sparse var saving

Shotgunosine
authored and
leej3
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1094c2f
more fixes for sparse/dense
leej3
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e1a977a
add model with convolution
leej3
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1889e41
Fix sparse variable filtering
Shotgunosine
committed
a1764f1
fix check columns in output dataframes
Shotgunosine
committed
5369664
use click for cli
leej3
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34a209f
enh don't rely on run node for get events collection
Shotgunosine
committed
3c57020
enh remove run node from rec and reg loading
Shotgunosine
committed
979ec10

Commits on May 14, 2021

remove params, kwargs no longer captured in params
leej3
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69c3720
add transforms reading function
leej3
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02cd6fc
add additional support for transformation parsing
leej3
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a9ae623

Commits on May 29, 2021

Apply suggestions from code review

john lee
and
effigies
authored
857c5e7
Merge remote-tracking branch 'origin/master' into add_design_aggregator
leej3
committed
520bab8
rename and move to cli
leej3
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6344816
make ta default to tr
leej3
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bb47b4c
improve parsing of transforms_in
leej3
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14391a9