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.gitmodules
.gitmodules
 
 
BIRD-noshrink.stan
BIRD-noshrink.stan
 
 
BIRD.stan
BIRD.stan
 
 
BIRDbath1.py
BIRDbath1.py
 
 
BIRDbath1.stan
BIRDbath1.stan
 
 
BIRDbath2-het.stan
BIRDbath2-het.stan
 
 
BIRDbath2-priors.py
BIRDbath2-priors.py
 
 
BIRDbath2-priors.stan
BIRDbath2-priors.stan
 
 
BIRDbath2.py
BIRDbath2.py
 
 
BIRDbath2.stan
BIRDbath2.stan
 
 
BOOM
BOOM
 
 
LICENSE
LICENSE
 
 
Pool.py
Pool.py
 
 
PooledParser.py
PooledParser.py
 
 
PooledVariant.py
PooledVariant.py
 
 
README.md
README.md
 
 
Replicate.C
Replicate.C
 
 
Replicate.H
Replicate.H
 
 
Replicate.py
Replicate.py
 
 
Replicates.C
Replicates.C
 
 
Replicates.H
Replicates.H
 
 
SwiftSample.C
SwiftSample.C
 
 
SwiftSample.H
SwiftSample.H
 
 
binomial.py
binomial.py
 
 
binomial.stan
binomial.stan
 
 
bird.py
bird.py
 
 
bird2.py
bird2.py
 
 
collapse-pools.py
collapse-pools.py
 
 
compile.py
compile.py
 
 
credible-interval.py
credible-interval.py
 
 
debug-graham.py
debug-graham.py
 
 
debug.py
debug.py
 
 
drop-homozygous.py
drop-homozygous.py
 
 
drop-non-homozygous.py
drop-non-homozygous.py
 
 
duplicate-pool.py
duplicate-pool.py
 
 
estimate-conc.py
estimate-conc.py
 
 
estimate-conc.stan
estimate-conc.stan
 
 
estimate-dispersion.py
estimate-dispersion.py
 
 
estimate-dispersion.stan
estimate-dispersion.stan
 
 
example-inputs.txt
example-inputs.txt
 
 
example-nulls.txt
example-nulls.txt
 
 
fdr.py
fdr.py
 
 
filter-maf.py
filter-maf.py
 
 
force-equal-frequencies.py
force-equal-frequencies.py
 
 
graham.py
graham.py
 
 
heterogeneity-rna.py
heterogeneity-rna.py
 
 
heterogeneity.py
heterogeneity.py
 
 
heterogeneity2.py
heterogeneity2.py
 
 
kari-reversed.py
kari-reversed.py
 
 
kari-variance.py
kari-variance.py
 
 
kari-variance2.py
kari-variance2.py
 
 
kari.py
kari.py
 
 
lambda.txt
lambda.txt
 
 
makefile
makefile
 
 
mle.py
mle.py
 
 
pick-lambda.py
pick-lambda.py
 
 
ppnb-integrated.stan
ppnb-integrated.stan
 
 
ppnb-sampled.stan
ppnb-sampled.stan
 
 
ppnb.py
ppnb.py
 
 
sim-binom-posterior.py
sim-binom-posterior.py
 
 
sim-model.py
sim-model.py
 
 
sim-pools.py
sim-pools.py
 
 
sim-rare.py
sim-rare.py
 
 
swift.C
swift.C
 
 
tail-probability.py
tail-probability.py
 
 

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BIRD

Bayesian Inference of Regulatory Differences

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Bayesian Inference of Regulatory Differences

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