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6 changes: 3 additions & 3 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ jobs:
# are not available as wheels, pip will build a wheel for them, which can be cached.
- name: Install wheel
run: pip install wheel
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- name: Fake a Planemo run to update cache and determine commit range, repositories, and chunks
Expand Down Expand Up @@ -85,7 +85,7 @@ jobs:
matrix:
python-version: ['3.11']
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: actions/setup-python@v6
Expand Down Expand Up @@ -135,7 +135,7 @@ jobs:
steps:
# checkout the repository
# and use it as the current working directory
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: actions/setup-python@v6
Expand Down
14 changes: 7 additions & 7 deletions .github/workflows/pr.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -83,7 +83,7 @@ jobs:
run: pip install wheel
- name: Install flake8
run: pip install flake8 flake8-import-order
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 0
- name: Fake a Planemo run to update cache and determine commit range, repositories, and chunks
Expand Down Expand Up @@ -116,7 +116,7 @@ jobs:
matrix:
python-version: ["3.11"]
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: actions/setup-python@v6
Expand Down Expand Up @@ -160,7 +160,7 @@ jobs:
matrix:
python-version: ["3.11"]
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: actions/setup-python@v6
Expand Down Expand Up @@ -192,7 +192,7 @@ jobs:
os: [ubuntu-24.04]
r-version: ["release"]
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: r-lib/actions/setup-r@v2
Expand Down Expand Up @@ -227,7 +227,7 @@ jobs:
if: ${{ github.event_name == 'pull_request' && needs.setup.outputs.repository-list != '' }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 0
- name: Check file sizes
Expand Down Expand Up @@ -270,7 +270,7 @@ jobs:
ports:
- 5432:5432
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: actions/setup-python@v6
Expand Down Expand Up @@ -373,7 +373,7 @@ jobs:
matrix:
python-version: ["3.11"]
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
fetch-depth: 1
- uses: actions/setup-python@v6
Expand Down
10 changes: 5 additions & 5 deletions .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
outputs:
nb: ${{ steps.set-diff.outputs.nb }}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
persist-credentials: false
fetch-depth: 0
Expand All @@ -31,7 +31,7 @@ jobs:
tag: ${{ steps.tag_label.outputs.tag }}
changelog: ${{ steps.tag_raw.outputs.changelog }}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
persist-credentials: false
fetch-depth: 0
Expand All @@ -56,7 +56,7 @@ jobs:
if: ${{ needs.Diff.outputs.nb > 0 }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
persist-credentials: false
fetch-depth: 0
Expand Down Expand Up @@ -90,7 +90,7 @@ jobs:
steps:
# Get Data
- name: 'Checkout'
uses: actions/checkout@v6
uses: actions/checkout@v7
with:
persist-credentials: false
fetch-depth: 0
Expand Down Expand Up @@ -124,7 +124,7 @@ jobs:
if: ${{ needs.Diff.outputs.nb > 0 }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v7
with:
persist-credentials: false
fetch-depth: 0
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/update.yml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ jobs:
matrix: ${{ steps.set-matrix.outputs.matrix }}
steps:
- name: 'Checkout'
uses: actions/checkout@v6
uses: actions/checkout@v7
- name: 'List repos'
id: set-matrix
run: echo "matrix=$(find tools -mindepth 1 -maxdepth 1 -type d | jq -R -s -c 'split("\n")[:-1] | map(split("/")[-1])')" >> "${GITHUB_OUTPUT}"
Expand All @@ -29,7 +29,7 @@ jobs:
repo: ${{ fromJson(needs.list.outputs.matrix) }}
steps:
- name: 'Checkout'
uses: actions/checkout@v6
uses: actions/checkout@v7
with:
token: ${{ secrets.USER_TOKEN }}
ref: main
Expand Down