[Hackathon] Change ImportResourceData to use updated resource_node schema#119
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jamesqo wants to merge 3 commits into
Open
[Hackathon] Change ImportResourceData to use updated resource_node schema#119jamesqo wants to merge 3 commits into
jamesqo wants to merge 3 commits into
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Convert MySQL to ClickHouse SQL dialect + Implement ID auto-increment in CH database (#107) - Dao layer SQL converted from MySQL compatibility into Clickhouse compatibility - add dependencies needed for Clickhouse driver (e.g. lz4) - added internal id auto-increment class with on-exit persistence in database table - incremental update logic also converted with adaptations and safeguards (due to loss of transactions) - one failing test requires merger of branch with transaction substitute (parallel work) - CI testing converted using testcontainers library and docker deployment of clickhouse - CI testing now resets database state before each test - CI testing make sensitive to clickhouse/mysql differences (like case sensitivity or array order) - introduce primary clickhouse table schema definition (analog to cgds.sql) - refactor test code for standardization and reuse - bugfixes where needed (e.g. incremental SV upload - added geneset testing
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March 26, 2026 18:07
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