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cBioPortal / cbioportal-core Public

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Add a script to filter mutations in a MAF file#66

Open

forus wants to merge 10 commits into

maincBioPortal/cbioportal-core:mainfrom

filter_maf_scriptcBioPortal/cbioportal-core:filter_maf_scriptCopy head branch name to clipboard

Conversation Commits10 (10)Checks Files changed

Open

Add a script to filter mutations in a MAF file#66
forus wants to merge 10 commits into
mainfrom
filter_maf_script

Commits

Commits on Oct 30, 2024

Cover with test data mutation filtering lines in the code
forus
committed
Remove filtering records Validation_Status=Wildtype
forus
committed
Move filtering out mutation with invalid chromosome from loader to filter class
forus
committed
Move skipping RNA type of mutations from loader to filter
forus
committed

Commits on Oct 31, 2024

Make filter accept maf record instead of extended mutation
forus
committed
Move mutation filtering by gene id and symbol from loader to filter
forus
committed

Commits on Nov 1, 2024

Fix mutation filter and write more tests
forus
committed
Add script to filter mutations in MAF file
forus
committed
Make FilteMutationData executable
forus
committed
Install python packages for docker image into venv envirounment
forus
committed

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