refactor: virtual-stain --init/--copy with Nextflow subworkflow - #259

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aofei-liu wants to merge 5 commits into

refactor-reconstructfrom

refactor-virtual-stain

Commits on Jun 8, 2026

refactor: virtual-stain --init/--copy with Nextflow virtual_stain subworkflow

aofei-liu
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claude
committed
55d34f3
refactor: virtual-stain use copy_metadata_from in create_empty_plate

aofei-liu
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claude
committed
d5b6841
refactor: replace read_plate_metadata with standard init pattern in virtual_stain

aofei-liu
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claude
committed
fe25510
refactor: step_dir() in virtual_stain.nf + metadata_sources rename

aofei-liu
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claude
committed
ffb9d76
refactor: path-agnostic virtual_stain.nf

aofei-liu
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claude
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16c0d9c