Make 39 notebooks Colab-ready: bootstrap cells + inline deps#141

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bendichter wants to merge 43 commits intomasterfrom

colab-bootstrap-pilot

Commits on Apr 23, 2026

Add Colab bootstrap cells to pilot notebooks (inline deps)

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Make 001038_demo Colab-ready (bootstrap cells, inline deps)
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Make 001084_demo Colab-ready (bootstrap cells, inline deps)
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Make 001170_demo Colab-ready (bootstrap cells, inline deps)
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Make 001754_demo Colab-ready (bootstrap cells, inline deps)
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Make browse_map_ephys_data Colab-ready (bootstrap cells, inline deps)
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Make 000727 reading_data Colab-ready (bootstrap cells, inline deps)

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Make fiber_photometry_example_notebook Colab-ready (bootstrap cells, inline deps, wget helper)
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Make optogenetics_example_notebook Colab-ready (bootstrap cells, inline deps, wget helper)
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Annotate install cells with Python 3.12 expectation + --system rationale

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Make visual_coding_ophys_tutorial Colab-ready (bootstrap cells, inline deps)

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Make 000_lindi_vs_fsspec_streaming Colab-ready (bootstrap cells, inline deps)

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Make advanced_asset_search Colab-ready (bootstrap cells, inline deps)

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Make simple_dandiset_search Colab-ready (bootstrap cells, inline deps)

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Make Get-to-know-a-Dandiset Colab-ready (bootstrap cells, inline deps)

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Make 001_summarize_contents Colab-ready (bootstrap cells, inline deps, helper fetch)
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Make NWBWidget-demo Colab-ready (bootstrap cells, inline deps)

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Fix NWBWidget-demo install: add zarr<3 and ipython_genutils

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Make 000402_microns_demo Colab-ready (bootstrap cells, inline deps)

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Fix 000402 microns_demo install: add zarr<3 + ipython_genutils

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Make simple_dandiset_search Colab-ready (bootstrap cells, inline deps)

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Make advanced_asset_search Colab-ready (bootstrap cells, inline deps)

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Make Create_manifest Colab-ready (bootstrap cells, inline deps)

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Make reanalysis Colab-ready (bootstrap cells, inline deps)

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Make 2021-09-27_dandi-demo Colab-ready (bootstrap cells, inline deps)

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Make analysis-demo Colab-ready (bootstrap cells, inline deps)

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Make DANDI_User_Guide-_Part_I Colab-ready (bootstrap cells, inline deps)

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Make DANDI_User_Guide-_Part_II Colab-ready (bootstrap cells, inline deps)

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Make read_avi Colab-ready (bootstrap cells, inline deps)

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Make reproduce_figure1d Colab-ready (bootstrap cells, inline deps)

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Make reproduce_figure_S1 Colab-ready (bootstrap cells, inline deps)

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Fix dattalab reproduce_figure pins: numpy<2 + cellpose<4

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Commits on Apr 24, 2026