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… analysis. Co-authored-by: alinelena <3306823+alinelena@users.noreply.github.com>
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We could consider this, but it doesn't seem terribly robust, and doesn't solve reading files with multiple structures. On a related note, we could try to support https://github.com/libAtoms/extxyz |
💡 What: Created a new utility function
read_extxyz_info_fastinml_peg/analysis/utils/utils.pyto quickly extract metadata from Extended XYZ files without parsing atom positions. Implemented this optimization in the Wiggle150 analysis benchmark script.🎯 Why:
ase.io.readparses the full atomic structure, which is extremely expensive when we only need the metadata (e.g. energies) located on the second line of the.xyzfiles for simple extraction and metric calculation.📊 Impact: This speeds up
infometadata reading by approximately ~6-7x, significantly reducing the bottleneck for iteration-heavy benchmarking and data-aggregation tasks.🔬 Measurement: Run local benchmarking comparing
ase.io.read(path).infovs.read_extxyz_info_fast(path)on an.xyzfile. Passed full test suite (uv run pytest tests/) and linter (uv run ruff check).PR created automatically by Jules for task 16069877508202070340 started by @alinelena