{bio,vis}[foss/2023a] SCENICplus v1.0a1-20240513, gensim v4.3.2, pyfasta v0.5.2, numexpr v2.9.0, Kaleido v0.2.1, Sphinx-RTD-Theme v2.0.0, scrublet v0.2.3 by pavelToman · Pull Request #21085 · easybuilders/easybuild-easyconfigs

pavelToman · 2024-07-29T12:42:09Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#64

….3.2-foss-2023a.eb, pyfasta-0.5.2-foss-2023a.eb, Kaleido-0.2.1-GCCcore-12.3.0.eb, numexpr-2.9.0-foss-2023a.eb, scrublet-0.2.3-foss-2023a.eb, Sphinx-RTD-Theme-2.0.0-GCCcore-12.3.0.eb and patches: scenicplus-1.0a1-18072024_requirements.txt.patch

pavelToman · 2024-07-29T12:47:03Z

@boegelbot please test @ generoso

boegelbot · 2024-07-29T12:50:05Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13965

Test results coming soon (I hope)...

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boegelbot · 2024-07-29T13:00:09Z

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 8 (7 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/de0b345903b78154ef118c9c68d9d858 for a full test report.

pavelToman · 2024-07-29T13:03:00Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-07-29T13:10:07Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4600

Test results coming soon (I hope)...

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boegelbot · 2024-07-29T13:47:03Z

Test report by @boegelbot
SUCCESS
Build succeeded for 9 out of 9 (7 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/6ff19775c9e45027ec9ad94632376b7e for a full test report.

smoors · 2024-07-30T19:04:12Z

Test report by @boegelbot FAILED Build succeeded for 6 out of 8 (7 easyconfigs in total) cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8 See https://gist.github.com/boegelbot/de0b345903b78154ef118c9c68d9d858 for a full test report.

polars needs to be built from branch 5.0.x, i spawned a build for generoso in #20275

pavelToman · 2024-07-31T14:10:51Z

@boegelbot please test @ generoso

boegelbot · 2024-07-31T14:15:10Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13981

Test results coming soon (I hope)...

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boegelbot · 2024-07-31T14:58:17Z

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in total)
cns3 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/a455dd3847efc1bf5d75d99f28b18073 for a full test report.

boegel · 2024-08-02T09:21:03Z

@boegelbot please test @ generoso

boegelbot · 2024-08-02T09:25:09Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13999

Test results coming soon (I hope)...

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boegelbot · 2024-08-02T09:35:55Z

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/cce589a15d6f6750c495863f9b814cf2 for a full test report.

pavelToman · 2024-08-02T14:34:11Z

@boegelbot please test @ generoso

boegelbot · 2024-08-02T14:35:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14002

Test results coming soon (I hope)...

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boegelbot · 2024-08-02T14:45:54Z

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/b626fe9824bbf1db4a4f23fac41446b6 for a full test report.

pavelToman · 2024-08-13T10:03:03Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-08-13T10:10:08Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4663

Test results coming soon (I hope)...

Details

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boegelbot · 2024-08-13T10:14:15Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 7 (7 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/727790fe83a03c4f19aedffa1b0f41ab for a full test report.

pavelToman · 2024-08-14T08:35:35Z

@boegelbot please test @ generoso

boegelbot · 2024-08-14T08:40:10Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14069

Test results coming soon (I hope)...

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boegelbot · 2024-08-14T08:57:14Z

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/005b0cba052dc0476d6fa4b291799b20 for a full test report.

pavelToman · 2024-08-14T09:21:58Z

Seems tensorflow-probability/0.20.0-foss-2023a is not installed on generoso?

smoors · 2024-08-14T09:24:31Z

Seems tensorflow-probability/0.20.0-foss-2023a is not installed on generoso?

it was rebuilt this morning, which probably clashed with your test
see #21172

pavelToman · 2024-08-14T09:38:11Z

@boegelbot please test @ generoso

boegelbot · 2024-08-14T09:40:08Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14072

Test results coming soon (I hope)...

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boegelbot · 2024-08-14T10:32:39Z

Test report by @boegelbot
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/e61c87cc1f95e13325d99cda4f9c152e for a full test report.

pavelToman · 2024-08-14T12:12:22Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-08-14T12:20:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4682

Test results coming soon (I hope)...

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boegelbot · 2024-08-14T12:56:18Z

Test report by @boegelbot
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/9c06c5d64eca2f1a1058c094e0a2fa4f for a full test report.

easybuild/easyconfigs/s/scenicplus/scenicplus-1.0a1-18072024-foss-2023a.eb

…nstallopts

pavelToman · 2024-08-20T17:22:33Z

@boegelbot please test @ generoso

boegelbot · 2024-08-20T17:25:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14101

Test results coming soon (I hope)...

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boegelbot · 2024-08-20T18:59:17Z

Test report by @boegelbot
SUCCESS
Build succeeded for 8 out of 8 (8 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/5173edd8861dff6e51eebdc96b81e690 for a full test report.

pavelToman · 2024-08-21T11:31:48Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-08-21T11:40:10Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21085 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21085 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4721

Test results coming soon (I hope)...

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boegelbot · 2024-08-21T12:16:44Z

Test report by @boegelbot
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/0ee16a89f6b94c675bf90a652fd4cd1b for a full test report.

easybuild/easyconfigs/s/SCENICplus/SCENICplus-1.0a1-20240513-foss-2023a.eb

boegel

lgtm

boegel · 2024-08-28T14:05:33Z

Test report by @boegel
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
node3123.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/d8499e12f96e77a3c3d08a5291b7a3b4 for a full test report.

boegel · 2024-08-29T07:32:39Z

Going in, thanks @pavelToman!

This was referenced Jul 29, 2024

SCENIC+ vscentrum/vsc-software-stack#64

Closed

scenicplus vscentrum/vsc-software-stack#369

Closed

Scenicplus #19060

Closed

add patch description

4691ffc

replace patch by sed in scenic+

2778f5c

boegel requested changes Aug 20, 2024

View reviewed changes

easybuild/easyconfigs/s/scenicplus/scenicplus-1.0a1-18072024-foss-2023a.eb Outdated Show resolved Hide resolved

boegel added new update labels Aug 20, 2024

boegel added this to the 4.x milestone Aug 20, 2024

update name, version, sources, postinstallcmds, local_pycistopic_prei…

0ccfd57

…nstallopts

remove old scenicplus from PR

cb60dca

boegel changed the title ~~{bio,vis}[foss/2023a] scenicplus v1.0a1-18072024, gensim v4.3.2, pyfasta v0.5.2, ...~~ {bio,vis}[foss/2023a] scenicplus v1.0a1-18072024, gensim v4.3.2, pyfasta v0.5.2, numexpr v2.9.0, Kaleido v0.2.1, Sphinx-RTD-Theme v2.0.0, scrublet v0.2.3 Aug 28, 2024

boegel requested changes Aug 28, 2024

View reviewed changes

easybuild/easyconfigs/s/SCENICplus/SCENICplus-1.0a1-20240513-foss-2023a.eb Outdated Show resolved Hide resolved

boegel and others added 2 commits August 28, 2024 12:27

don't use %(namelower)s template in name of SCENICplus extension

5d1388a

Update SCENICplus-1.0a1-20240513-foss-2023a.eb - typo

b34d3cb

boegel approved these changes Aug 28, 2024

View reviewed changes

boegel modified the milestones: 4.x, release after 4.9.2 Aug 28, 2024

boegel merged commit ebad519 into easybuilders:develop Aug 29, 2024

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