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Import types of cancer through the cbioportal-core importer #1299

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Import types of cancer through the cbioportal-core importer #1299

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2 changes: 1 addition & 1 deletion import-scripts/import-dmp-impact-data.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -143,7 +143,7 @@ fi
if [ $DB_VERSION_FAIL -eq 0 ] ; then
# import into portal database
echo "importing cancer type updates into msk portal database..."
$JAVA_BINARY -Xmx16g $MSK_JAVA_IMPORTER_ARGS --import-types-of-cancer --oncotree-version ${ONCOTREE_VERSION_TO_USE}
$PYTHON_BINARY $CBIO_IMPORTER_SCRIPT import-types-of-cancer --oncotree-url "http://oncotree.mskcc.org/" --oncotree-version $ONCOTREE_VERSION_TO_USE
if [ $? -gt 0 ] ; then
sendImportFailureMessageMskPipelineLogsSlack "Cancer type updates"
fi
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