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extracting bubbles from a 20 Gb GFA file

Status: Open.

#37 In lh3/gfatools;

· okendojo opened on Jun 25, 2025

gfa2fa - what happens when using the -s flag

Status: Open.

#35 In lh3/gfatools;

· mb47 opened on Aug 1, 2024

Can rGFA be used to liftover coordinates between genomes?

Status: Open.

#34 In lh3/gfatools;

· adadiehl opened on Jun 27, 2024

gfatools view to subset a gfa file

Status: Open.

#33 In lh3/gfatools;

· Dkyuan opened on Sep 21, 2023

The question about format of fasta using gfatoos gfa2fa

Status: Open.

#31 In lh3/gfatools;

· Daishoulu opened on May 8, 2023

Using gfatools asm

Status: Open.

#30 In lh3/gfatools;

· aafshinfard opened on Feb 17, 2023

How to convert fastG to GFA?

Status: Open.

#29 In lh3/gfatools;

· tarunaaggarwal opened on Jan 28, 2023

Can I extract path sequences from GFA or rGFA by pathname？

Status: Open.

#27 In lh3/gfatools;

· 8banzhuan opened on Sep 26, 2022

"A" line produced by gfatools asm

Status: Open.

#26 In lh3/gfatools;

· yatsukha opened on Jul 23, 2022

Invalid GAF is produced

Status: Open.

#25 In lh3/gfatools;

· asl opened on Jul 11, 2022

conversion of GFA to rGFA

Status: Open.

#23 In lh3/gfatools;

· gsc74 opened on Apr 27, 2022

gfatools bubble doesn't work on GFA after bubble popping with gfatools asm

Status: Open.

#22 In lh3/gfatools;

· lstevens17 opened on Apr 6, 2022