ci: green up modular-viscy-staging (CI matrix, deps, lint) - #435

Merged

alxndrkalinin merged 28 commits into

modular-viscy-stagingfrom

ci/staging-green-up

Jun 3, 2026

Commits on May 23, 2026

ci: drop Python 3.11 from matrix and trigger on modular-viscy-staging
edyoshikun
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49b15fa
fix(deps): declare viscy-transforms test dep and hydra-core for dynacell
edyoshikun
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7540a5d
fix(dynaclr): rename test_2d_mip_augmentation.py to demo_; scope pytest to tests/
edyoshikun
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0de2ad9
style: satisfy pre-commit (ruff format, EOF, D100/D102, E741, NPY002)
edyoshikun
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6147447

Commits on May 28, 2026

Merge origin/modular-viscy-staging into ci/staging-green-up

edyoshikun
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claude
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789409b

Commits on Jun 1, 2026

fix(dynaclr): unpack tuple from ExperimentRegistry.from_cell_index in e2e test

edyoshikun
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claude
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052ba88
fix(dynacell): point predict-leaf test at split celldiff inference configs

edyoshikun
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claude
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e93c31d
style: ruff format PREDICT_LEAF_FILES comprehension

edyoshikun
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claude
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2a70a61
fix(viscy-data): pin iohub codec pipeline to zarr-python, not zarrs

edyoshikun
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claude
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7afcca6
fix(dynacell): lazy-import torch_fidelity in feature_metrics

edyoshikun
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claude
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eec3885
fix(dynaclr): repoint class-path-resolution tests at demo configs

edyoshikun
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claude
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b4e5339
fix(dynacell): align 4gpu-constraint test with hardware_4gpu.yml (h100|h200)

edyoshikun
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claude
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69bf3e9
fix(viscy-data): make mmap-sharing test child picklable for spawn

edyoshikun
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claude
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8ca1529

Commits on Jun 2, 2026

fix(dynacell): reconcile benchmark-config tests with split/redesigned leaves

edyoshikun
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claude
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d230bb1
fix(viscy-data): use fork context + Windows skip for mmap-sharing test

edyoshikun
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claude
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06ddf08
test(dynaclr): import NTXentLoss from viscy_models

srivarra
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claude
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89b2f8a
test(dynaclr): use bag-of-channels for heterogeneous experiments

srivarra
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claude
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a261dd8
test(dynaclr): repoint multi-experiment parquet test at cell_index_path entry point
edyoshikun
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da8cdbd
merge: integrate modular-viscy-staging (#429 eval refactor) into green-up
edyoshikun
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2060622
deps: regenerate uv.lock after green-up merge
edyoshikun
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8697c11
merge: sync remote green-up dynaclr test fixes
edyoshikun
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83971c9
fix(dynacell): green up dynacell-configs CI (run_for_group import + a549 any-GPU test) (#446)

alxndrkalinin
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claude
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146ac39
fix(dynacell/eval): unblock dynacell-configs CI (lazy cubic import) + cross-condition probe hardening (#447)

alxndrkalinin
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claude
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f296635
fix(ci): install dynacell eval extra instead of hiding cubic imports

alxndrkalinin
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claude
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b883a5e
refactor(dynacell/eval): restore module-level torch_fidelity imports

alxndrkalinin
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claude
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3e5005b
fix(dynacell/eval): don't hard-require cupy/cucim; use cubic CPU fallback

alxndrkalinin
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claude
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8f60469
fix(dynacell/eval): resolve NPZ path for the embedding cache key

alxndrkalinin
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claude
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c612946

Commits on Jun 3, 2026

buump iohub 0.3.6
edyoshikun
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2dc9750