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Fix poolsnp linting

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Graphite App

Graphite / mergeability_check

Run when nf-test tests are skipped on: pull_request

check-files

confirm-pass-nf-test

Run Linting on: pull_request

pre-commit

nf-core-changes

nf-core lint modules (leehom)

nf-core lint modules (poolsnp)

nf-core lint modules (samtools/addreplacerg)

nf-core lint modules (samtools/ampliconclip)

nf-core lint modules (samtools/bam2fq)

nf-core lint modules (samtools/bedcov)

nf-core lint modules (samtools/bgzip)

nf-core lint modules (samtools/calmd)

nf-core lint modules (samtools/cat)

nf-core lint modules (samtools/collate)

nf-core lint modules (samtools/collatefastq)

nf-core lint modules (samtools/consensus)

nf-core lint modules (samtools/convert)

nf-core lint modules (samtools/coverage)

nf-core lint modules (samtools/cramsize)

nf-core lint modules (samtools/depth)

nf-core lint modules (samtools/dict)

nf-core lint modules (samtools/faidx)

nf-core lint modules (samtools/fasta)

nf-core lint modules (samtools/fastq)

nf-core lint modules (samtools/fixmate)

nf-core lint modules (samtools/flagstat)

nf-core lint modules (samtools/getrg)

nf-core lint modules (samtools/idxstats)

nf-core lint modules (samtools/import)

nf-core lint modules (samtools/index)

nf-core lint modules (samtools/markdup)

nf-core lint modules (samtools/merge)

nf-core lint modules (samtools/mpileup)

nf-core lint modules (samtools/quickcheck)

nf-core lint modules (samtools/reheader)

nf-core lint modules (samtools/samples)

nf-core lint modules (samtools/sormadup)

nf-core lint modules (samtools/sort)

nf-core lint modules (samtools/splitheader)

nf-core lint modules (samtools/stats)

nf-core lint modules (samtools/view)

nf-core lint modules (sexdeterrmine)

nf-core lint subworkflows (bam_dedup_stats_samtools_umicollapse)

nf-core lint subworkflows (bam_dedup_stats_samtools_umitools)

nf-core lint subworkflows (bam_dedup_umi)

nf-core lint subworkflows (bam_markduplicates_picard)

nf-core lint subworkflows (bam_markduplicates_samtools)

nf-core lint subworkflows (bam_sort_stats_samtools)

nf-core lint subworkflows (bam_split_by_region)

nf-core lint subworkflows (bam_stats_samtools)

nf-core lint subworkflows (bam_subsampledepth_samtools)

nf-core lint subworkflows (fastq_align_bwaaln)

nf-core lint subworkflows (fastq_align_dedup_bwamem)

nf-core lint subworkflows (fastq_align_dedup_bwameth)

nf-core lint subworkflows (fastq_create_umi_consensus_fgbio)

confirm-pass-lint

Run when nf-test-gpu tests are skipped on: pull_request

check-files

confirm-pass-gpu

Run GPU nf-tests on: pull_request

nf-test-changes

GPU Test | g4dn.xlarge | docker | 1

GPU Test | g4dn.xlarge | singularity | 1

GPU Test | g4dn.xlarge | docker | 2

GPU Test | g4dn.xlarge | singularity | 2

GPU Test | g4dn.2xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

confirm-pass-gpu

Run nf-test on: pull_request

nf-test-changes

x64 | conda | 1

x64 | docker | 1

x64 | singularity | 1

x64 | conda | 2

x64 | docker | 2

x64 | singularity | 2

x64 | conda | 3

x64 | docker | 3

x64 | singularity | 3

x64 | conda | 4

x64 | docker | 4

x64 | singularity | 4

x64 | conda | 5

x64 | docker | 5

x64 | singularity | 5

x64 | conda | 6

x64 | docker | 6

x64 | singularity | 6

x64 | conda | 7

x64 | docker | 7

x64 | singularity | 7

x64 | conda | 8

x64 | docker | 8

x64 | singularity | 8

x64 | conda | 9

x64 | docker | 9

x64 | singularity | 9

x64 | conda | 10

x64 | docker | 10

x64 | singularity | 10

x64 | conda | 11

x64 | docker | 11

x64 | singularity | 11

x64 | conda | 12

x64 | docker | 12

x64 | singularity | 12

x64 | conda | 13

x64 | docker | 13

x64 | singularity | 13

x64 | conda | 14

x64 | docker | 14

x64 | singularity | 14

x64 | conda | 15

x64 | docker | 15

x64 | singularity | 15

x64 | conda | 16

x64 | docker | 16

x64 | singularity | 16

confirm-pass-nf-test

labeler on: pull_request

Label the PR size

Graphite App / Graphite / mergeability_check succeeded Jul 13, 2026 in 0s

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