Issue 131

.github/workflows/ci.yml

@@ -3,7 +3,7 @@ name: Ubuntu CI
 on:
   push:
     branches:
-    - master
+    - '*'
     tags:
     - "*"
   pull_request:
@@ -49,14 +49,16 @@ jobs:
       - name: Test command
         run: poetry run shadems --help
 
-      - name: Run testsuite
+      - name: Run test suite
         run: poetry run py.test -vvv shade_ms/
 
       - name: Download test dataset
         run: curl https://ratt-public-data.s3.af-south-1.amazonaws.com/test-data/HLTau_B6cont.calavg.tav300s.tar.xz | tar xJf -
 
       - name: Run end to end test
-        run: poetry run shadems HLTau_B6cont.calavg.tav300s
+        run: |
+          poetry run shadems HLTau_B6cont.calavg.tav300s
+          poetry run shadems HLTau_B6cont.calavg.tav300s -x FREQ -y amp -a FLAG --field 0 --title 'test1' --col DATA --png test.png --corr XX --ymin 0 --ymax 30
 
 
   # deploy:

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "shadems"
-version = "0.5.4"
+version = "0.5.5"
 description = "Rapid Measurement Set plotting with dask-ms and datashader"
 authors = ["Ian Heywood & RATT <ian.heywood@physics.ox.ac.uk>"]
 license = "GPL-2.0-only"

shade_ms/data_mappers.py

@@ -359,7 +359,7 @@ def get_value(self, group, corr, extras, flag, flag_row, chanslice):
         # # discretize
         # if self.nlevels:
 
-        if coldata.dtype is bool or np.issubdtype(coldata.dtype, np.integer):
+        if coldata.dtype == bool or np.issubdtype(coldata.dtype, np.integer):
             if self._is_discrete is False:
                 raise TypeError(f"{self.label}: column changed from continuous-valued to discrete. This is a bug, or a very weird MS.")
             self._is_discrete = True
@@ -373,6 +373,9 @@ def get_value(self, group, corr, extras, flag, flag_row, chanslice):
                     flag = bad_bins
                 else:
                     flag = da.logical_or(flag.data, bad_bins)
+            # Adding to treat flag as 0/1
+            if coldata.dtype == bool:
+                coldata = coldata.astype(int)
         else:
             if self._is_discrete is True:
                 raise TypeError(f"{self.label}: column chnaged from discrete to continuous-valued. This is a bug, or a very weird MS.")